| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,090,341 | Δ1 bp | intergenic (+89/‑6) | yggI → / → endA | conserved protein YggI/DNA‑specific endonuclease I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,090,341 | 0 | T | . | 99.3% | 685.6 / ‑1.9 | 141 | intergenic (+89/‑6) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (73/66); total (74/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 141 total aligned reads displayed.
ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAG > NC_000913/3090296‑3090384 | aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:348233/1‑50 (MQ=255)aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:2549538/1‑50 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:1332552‑M1/1‑49 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc < 1:3269919‑M1/50‑3 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc < 1:4887086‑M1/50‑3 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:2584897‑M1/1‑48 (MQ=255) cAAAACAGCTTTCGCTACGTTGCTGGATCGTTTTAACACGGAG‑AAGTGcc > 1:1546178‑M1/1‑48 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:4285754‑M1/50‑5 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 2:1552251‑M1/1‑46 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGA‑TAAGTGccta > 1:1747545‑M1/1‑46 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:1173620‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:4216318‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 2:1720052‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca > 2:2680833‑M1/1‑44 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 2:3261415‑M1/50‑7 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 2:3272350‑M1/50‑7 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 2:4792338‑M1/1‑43 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 2:642504‑M1/1‑43 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:4002846‑M1/50‑8 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccttcact < 2:112206‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:4240455‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 2:2730292‑M1/1‑42 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 2:3499668‑M1/50‑10 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta < 2:4571669‑M1/50‑10 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:602069‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 2:3718238‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 2:5125920‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacaatag < 2:551155‑M1/50‑11 (MQ=255) cTTTCGCTAAGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag > 2:3977909‑M1/1‑40 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 2:216628‑M1/1‑39 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 2:2370993‑M1/1‑38 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 2:667174‑M1/1‑37 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 2:3970155‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 2:2882496‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:4557032‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:2844239‑M1/48‑12 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 2:5537624‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2672257‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:3780036‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:4273280‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 2:4838505‑M1/49‑15 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 2:2082858‑M1/1‑34 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 2:1866632‑M1/50‑17 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 2:4315249‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 2:4903883‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 2:4006231‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:352939‑M1/1‑33 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 2:5631946‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 2:2473546‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc < 1:4429787‑M1/49‑19 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:3973607‑M1/48‑18 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:5155103‑M1/1‑30 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt > 1:2691199‑M1/1‑29 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt < 1:1338601‑M1/50‑22 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 2:3857393‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 2:4530705‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 2:3014289‑M1/1‑28 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt > 2:1515890‑M1/1‑27 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:4557383‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 2:2879887‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 2:5147544‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:5765545‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:5625120‑M1/49‑23 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 2:3496563‑M1/50‑25 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg > 2:5602356‑M1/1‑26 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:4157851‑M1/49‑24 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 2:2471716‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 2:4075706‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 2:1048373‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:5160356‑M1/1‑25 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 2:4818464‑M1/1‑24 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 2:1313914‑M1/1‑24 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:1304875‑M1/1‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:4030067‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:1743605‑M1/1‑23 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:4903526‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt > 1:4207225‑M1/1‑23 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 2:4879190‑M1/50‑29 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 1:4184149‑M1/50‑29 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:2439561‑M1/1‑21 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:5365592‑M1/1‑20 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 2:708950‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:3709090‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac < 2:2564466‑M1/48‑30 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:1147387‑M1/1‑18 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 2:5178021‑M1/50‑33 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 2:625245‑M1/1‑17 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:2838842‑M1/1‑17 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 2:5729446‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 2:2052557‑M1/49‑34 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac > 2:3504184‑M1/1‑15 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:671550‑M1/49‑35 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:3222370‑M1/49‑35 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:533783‑M1/49‑35 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggcttctttttgttaacccctacc > 1:5244136‑M1/1‑14 (MQ=255) aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac < 1:5533983‑M1/49‑36 (MQ=255) aaCACGG‑GGAAGTGcctacactagcgggattctttttgttaacccctac < 1:5705082‑M1/49‑36 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:817800‑M1/49‑37 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 2:1662282‑M1/50‑39 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:2912948‑M1/50‑39 (MQ=255) | ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAG > NC_000913/3090296‑3090384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |