| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 15,389 | Δ5,175 bp | insL‑1–insA‑1 | insL‑1, hokC, mokC, sokC, nhaA, nhaR, insB‑1, insA‑1 | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 15389 | 20563 | 5175 | 154 [0] | [0] 157 | insL‑1–insA‑1 | insL‑1,hokC,mokC,sokC,nhaA,nhaR,insB‑1,insA‑1 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 15388 | 0 (0.000) | 150 (1.010) | 65/96 | 0.0 | 100% | noncoding (2/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 20564 = | 0 (0.000) | intergenic (‑56/+251) | insA‑1/rpsT | IS1 protein InsA/30S ribosomal subunit protein S20 | |||||
Only 100 of 154 total aligned reads displayed.
TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTA < 1:2722231/50‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 1:3901410/49‑1 GGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCT < 2:3709452/49‑1 GGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTtc > 1:1527891/1‑48 GTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCCCTCTCCC > 2:5082638/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCT > 2:543916/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCT > 1:3152542/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCT > 1:2879822/1‑50 TGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCT < 2:1110625/50‑1 GCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTTCCT > 2:5553460/1‑49 GCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGAGCACTCTACCT > 2:5723927/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTC > 1:383039/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTC > 2:3977300/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTC > 1:285673/1‑49 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCA < 2:1673782/50‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 1:5573282/49‑1 CGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTC < 2:4416856/49‑1 GTTGAAGATATGCGAGCTCCTGTAAAGTGGCGGGGATCTCTCTACCTCAA < 2:3609355/50‑1 GTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAA > 1:2460890/1‑50 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAg < 2:4562787/50‑2 TTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAAT < 1:4535319/50‑1 TGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCATG > 1:3276031/1‑50 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATG < 2:2250670/49‑1 GAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCCCCATGT > 2:3835029/1‑50 AAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTG < 1:521303/50‑1 AGATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCTCAATGTG > 1:4970403/1‑49 AGATATGCGAGCACCTGTAAAGTGGCGGGGGACACTCTAACTCAATGTG > 2:1981201/1‑49 AGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGT < 2:470503/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGGTCAATCTACCTCCATGTGga > 2:5377129/1‑48 GATATGCGAGCACCTGTAAAGTGGCGGGGGTAACTCCACCTCCATGTGTA > 1:1546093/1‑50 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:4553715/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 2:2209451/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:1092087/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTA < 1:5624738/50‑1 GATATGCGAGCACCTGTAAAGTGGCGGGGAACACCCTACCTCAATGTGTA > 1:4290491/1‑50 ATATGCGAGCACCTGTAAAGTGGCGGGGGTCACTCTACCCCAATGTGTAT > 2:4338717/1‑50 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 2:1662163/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 2:1213560/50‑1 TATGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATC < 2:2136565/50‑1 ATGCGAGCACCTGTAAAGTGGCGGGGGTCAATCTACCTCCATGTGTATta > 1:5142978/1‑48 TGCGAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCA < 1:4138760/49‑1 CGAGCACCTGTAAAGTGGCGGGGGTCACTCCACCTCAATGTGTATCACA > 2:2807980/1‑49 GAGCACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAAT < 1:2092251/50‑1 CACCTGTAAAGTGGCGGGGATCACTCTCCCTCAACGTGTTTCACAATATC > 2:731712/1‑50 CACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATC < 1:2993215/50‑1 ACCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCC < 2:5769535/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 2:4673107/50‑1 CCTGTAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCA < 2:2938398/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 2:5781804/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATT < 2:2318586/50‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATAT < 1:2961674/49‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:512/48‑1 TAAAGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATA < 2:2413794/48‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 2:1094297/50‑1 AGTGGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTT < 1:5116474/50‑1 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 1:5013877/1‑50 GGCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT > 2:4052/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG < 1:4592311/50‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTG > 2:4102795/1‑50 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 1:2341620/49‑1 GCGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGT < 2:5247236/49‑1 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:4706305/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 2:4251685/1‑50 CGGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGG > 1:5060830/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATCTTCTTTGTGGG > 2:1862033/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 2:1123776/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 2:3368995/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:575296/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:5818941/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:2511998/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:2779429/1‑50 GGGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGG > 1:1442150/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 2:3846388/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2628078/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG < 2:4699817/50‑1 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 2:3319085/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:2226507/1‑50 GGGATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1031395/1‑50 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 1:4652618/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGA < 2:4351192/50‑1 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 2:4231568/1‑48 GATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGG > 1:1488565/1‑48 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG < 1:3896532/50‑1 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 2:4891159/1‑50 ATCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAG > 2:2240554/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 1:5267437/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT > 2:3732475/1‑50 TCACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGT < 1:3677147/50‑1 CACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 2:1995274/1‑50 CACTCTAACTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC > 2:1902892/1‑50 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 2:2536355/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCT < 2:573300/50‑1 ACTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTC < 1:1811981/49‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:4479676/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG < 2:2612276/50‑1 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:637924/1‑50 CTCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGACTG > 2:2423316/1‑50 TCTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:1518071/1‑49 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 2:3097662/1‑48 CTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > 1:5685133/1‑48 TAGGGTGCGTTGAAGATATGCGAGCACCTGTAAAGTGGCGGGGATCACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/15339‑15388‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTACCTCAATGTGTATCACAATATCCATATTCTTTGTGGGGGAGTCTG > NC_000913/20564‑20610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |