| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 106 [0] | [1] 105 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 104 (0.690) | 62/98 | 0.1 | 99.5% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 1 (0.010) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
Only 100 of 104 total aligned reads displayed.
GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508824‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG > 1:1715318/1‑50 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG < 2:5617088/50‑1 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTG < 1:53377/49‑1 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGA < 1:1925986/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 2:1754943/50‑1 CGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC > 1:2052925/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG < 1:5441779/50‑1 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG < 2:2024915/50‑1 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG > 2:3986673/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC < 2:45176/49‑1 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC < 2:370631/49‑1 GCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG > 2:587510/1‑49 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCA < 2:937516/50‑1 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGC > 1:2267189/1‑49 CCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGC < 1:4316447/49‑1 CCAAATGCGCCACCCTAAAGCAGCGCAGCCGCAATGATGTGGAACGCGC < 2:328983/49‑1 CAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAA > 2:1129583/1‑50 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 2:3388347/50‑1 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 2:423007/50‑1 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 2:4373593/50‑1 AAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT < 1:1551879/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATG < 1:1144734/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATG < 1:1762923/50‑1 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA < 2:5702620/50‑1 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA > 1:1295775/1‑50 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC < 1:5121113/50‑1 TGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC < 1:4788180/50‑1 GCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGAC > 1:1011178/1‑49 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 1:5515352/1‑50 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA < 2:1837083/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 2:1910596/1‑50 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 2:4886364/49‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACG < 1:5254847/49‑1 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 1:1552976/1‑50 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:4002056/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:2748736/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 2:3141281/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:2071280/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 2:633057/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:4091654/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:3716629/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 2:2072683/1‑49 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT < 1:2119785/50‑1 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT < 2:4713737/50‑1 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT < 2:130222/50‑1 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 2:3528593/50‑1 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:3379131/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 2:417139/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 2:5235548/50‑1 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA > 1:3315012/1‑50 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA < 1:4329092/50‑1 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA > 1:611826/1‑50 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCC < 1:5070461/50‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC < 1:13443/49‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT < 1:4206094/48‑1 AAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT < 2:5369319/48‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT > 1:3599835/1‑50 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT < 1:3900171/50‑1 AGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCT > 1:2253510/1‑50 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC > 1:48510/1‑50 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC < 2:2063066/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:3271164/1‑50 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 2:1677954/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:2918972/50‑1 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 1:4048057/50‑1 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 2:3035422/50‑1 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 1:2227676/50‑1 GCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGC < 2:1791725/50‑1 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT < 1:491260/50‑1 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT > 1:4025092/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGTTCATCCATCCTCTGCTT < 2:4416836/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 2:261461/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 2:2817333/50‑1 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 2:1878951/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 1:751379/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 2:165016/50‑1 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC < 1:428034/50‑1 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC < 1:4324258/50‑1 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCC < 1:2557644/50‑1 CGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCta < 1:4430428/49‑3 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 2:1526778/1‑49 CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTA < 2:3280395/50‑1 CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTA < 2:3687507/50‑1 CAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTA < 2:5395574/50‑1 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG < 2:3195826/50‑1 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGT < 1:4834349/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:1683520/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 2:3954999/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 2:1943815/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTA < 1:705958/50‑1 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:1755903/1‑50 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:3154831/1‑50 GATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG > 1:1890980/1‑50 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC < 2:1358041/50‑1 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAG < 1:3761505/49‑1 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > 2:1503175/1‑50 TGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG < 2:1261612/50‑1 GTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCG > 2:1478492/1‑49 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA < 2:437207/50‑1 TGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA < 1:4079127/50‑1 GCGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508824‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |