| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 131 [0] | [0] 129 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 129 (0.850) | 70/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 129 total aligned reads displayed.
CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT > 1:5755155/1‑50 AGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTT < 1:1969628/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 1:4542306/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 2:3835309/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 2:4037275/50‑1 GGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG < 2:4477294/50‑1 GGCGGCAAAACGCTGGTACATTTTTGTTAGCCGGATAAGGCACCGCTTT > 2:3699976/1‑49 GCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTG > 1:5534362/1‑49 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 2:1317427/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 2:5517288/50‑1 CGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAA < 1:2597660/50‑1 GGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAG > 2:1105167/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:1603027/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC < 1:1821519/50‑1 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 2:1901528/1‑50 GCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 1:2978172/1‑50 CAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGC > 2:2918032/1‑49 AAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGA < 2:1973104/50‑1 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 2:2133262/1‑50 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 2:2553384/1‑50 AAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAG > 1:427998/1‑50 gCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 1:1471425/49‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC > 2:4295228/1‑50 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC < 2:5444036/50‑1 ACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCC > 2:3505537/1‑50 CGCTGGTAGTTTTTTGTTATCCGGATAAGGCACCGCTTTGAAGCGAGCCG > 2:1654472/1‑50 CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG > 1:2241687/1‑50 CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG > 2:344530/1‑50 CGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCG < 2:5825430/50‑1 GCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGC > 1:1880883/1‑50 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 2:3811711/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 2:2886308/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 1:3836649/1‑49 TGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCT > 2:2192646/1‑49 GTAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTC < 2:117496/48‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 2:475631/50‑1 TAGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAAT < 2:4151754/50‑1 AGTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA > 1:4088522/1‑50 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 2:4695599/1‑50 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 2:5533507/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC < 1:110140/50‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 2:1998059/49‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 1:1140212/49‑1 GTTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATA < 2:4077144/49‑1 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 1:4582398/1‑49 TTTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATAC > 2:1990307/1‑49 TTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 2:5707829/1‑50 TTTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 2:4884829/1‑50 TTTTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTA > 1:1446336/1‑49 TTGTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACAC > 2:4282941/1‑50 GTTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACT < 2:1427801/49‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:3745805/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:3585811/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT < 1:2497379/50‑1 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTT > 1:648239/1‑50 TTAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTT < 2:2282371/49‑1 TAGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 1:4978192/1‑50 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 2:2145647/49‑1 AGCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT < 2:4159460/49‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTA < 2:1053157/50‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTT < 1:5149474/49‑1 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 2:235155/1‑48 GCCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTT > 2:2462613/1‑48 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG < 2:1982370/50‑1 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:4342891/1‑50 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:3773396/1‑50 CCGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:1906436/1‑50 CGGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:4563787/1‑49 GGATATGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 2:3508760/1‑48 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 1:1910764/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA < 1:5723106/50‑1 GGATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:2380490/1‑48 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAG < 2:1511491/50‑1 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAG < 2:4344782/50‑1 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAG < 1:1580047/50‑1 GATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAG > 1:2776030/1‑47 ATAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:4405346/1‑48 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 2:1448278/50‑1 TAAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAG < 1:2945819/50‑1 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 2:640663/1‑46 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 2:2774025/1‑46 AAGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:4907694/1‑46 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT < 2:5059270/50‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGA < 2:5278840/49‑1 AGGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCA > 1:403574/1‑45 GGCACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAT > 2:1007424/1‑49 CACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAG < 1:5655086/50‑1 ACCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 2:1506195/1‑50 CCGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGT > 2:4668441/1‑49 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA < 2:4565940/50‑1 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA > 2:1335372/1‑50 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA > 2:5623232/1‑50 CGCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCA < 1:5001788/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC < 2:5597913/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC < 1:1315790/50‑1 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 2:5842573/1‑50 GCTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAC > 2:3662654/1‑50 CTTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 2:4954967/1‑50 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 2:1307001/1‑49 TTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > 1:61206/1‑49 CAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/819727‑819775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882753‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |