| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 77 [0] | [0] 78 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 76 (0.500) | 46/98 | 0.4 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129350‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC > 1:3610158/1‑50 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 2:1190821/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 2:4118706/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 2:4656674/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:1201878/50‑1 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:781881/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 2:3271082/50‑1 TTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 2:2454730/1‑49 TTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT > 1:1848979/1‑49 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA < 1:4087058/49‑1 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA > 1:1471480/1‑49 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA < 2:1164257/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA < 1:1253125/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA < 2:2668179/49‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 2:4554333/1‑49 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAAC < 2:2106988/50‑1 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 1:2292184/1‑49 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA > 2:352580/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 2:4778093/1‑49 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA > 1:4196756/1‑49 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTTGCTTTAAAACATA > 1:1818473/1‑50 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA > 1:3415431/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:2655154/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:1946298/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 2:2153282/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 2:674404/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:4923871/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 2:608505/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 2:2007554/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 2:4762559/1‑49 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 2:3255294/1‑49 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 2:1943461/1‑49 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:1613275/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 2:1697125/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 2:5201493/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:3753298/1‑49 GTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA > 2:5672257/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC < 1:160826/50‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC < 1:2011806/50‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 2:2233717/49‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 2:698636/49‑1 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG > 2:422658/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG > 1:1943292/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTG > 1:1648561/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:1340766/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:5276881/1‑50 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:4013425/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG < 1:1574138/50‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:4786657/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:1747282/1‑50 ATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGT < 1:493567/50‑1 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA > 1:5286253/1‑50 GCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTAT > 1:329435/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 2:1185469/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 2:3280946/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 2:5254254/1‑50 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT > 2:4343568/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > 1:4005240/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > 2:589693/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT < 1:5647579/50‑1 CCTGCAGTGTTCGCTTTATAACATATCATGAAACTGGGTATGTTTTGTCT > 2:5572027/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:970967/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:676771/50‑1 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG > 2:1794084/1‑50 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 2:2564589/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 2:4124657/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:4325905/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:825857/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 1:4080272/50‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 2:3035750/50‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT > 1:1196304/1‑50 AGTGTTCGCTTTAAAACATGTCATGAAACGGGGTATGTTTTGTCTGCCTG < 2:3924714/50‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:2246427/1‑50 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 1:3470014/1‑50 GTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGC > 2:5847403/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT < 2:5835528/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129350‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |