| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 92 [0] | [0] 89 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 85 (0.580) +GA |
58/94 | 0.1 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:2895363/50‑1CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:5800889/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 2:681667/50‑1 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGA < 1:3562242/50‑1 GGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAA < 2:3858359/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:2452452/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:5368691/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:5206918/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:4002303/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 2:2621845/1‑50 TCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:4756123/1‑49 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 1:4207576/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCC < 1:3099879/49‑1 CAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT > 2:3601697/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:3695426/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:2780684/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:725437/47‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT < 1:1927687/50‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 2:3334830/1‑50 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:677638/1‑50 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTT > 1:3914809/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGA < 2:5521484/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTG > 1:1495450/1‑49 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 1:1044605/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA > 2:3327387/1‑50 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAA < 2:1691990/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 2:1272024/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT > 2:3418348/1‑50 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 2:5315765/50‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 2:1832535/50‑1 CTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTT < 2:4421846/50‑1 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:3730777/1‑50 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 2:4900829/1‑50 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 2:537120/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG < 1:1784417/50‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC < 1:3828051/49‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:3175184/50‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:1668617/50‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:4982225/50‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACG > 2:3456788/1‑49 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAA < 1:828872/50‑1 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 2:3473674/1‑50 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 1:1530532/1‑50 TCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC > 1:1739013/1‑50 TCAATTTGTGGCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAAC < 1:5619762/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:5507755/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGG < 1:146065/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:2506686/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 2:4864964/1‑49 TTTGTGTCACCCGCAGTGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1967604/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC > 2:2013182/1‑50 TGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG < 1:5629244/49‑1 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCA > 1:748417/1‑50 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGC < 2:2106465/49‑1 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 2:1343075/1‑50 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 2:1344194/1‑50 TGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT < 2:2840231/50‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:3574669/50‑1 TCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTA < 1:4519439/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 2:3728712/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:757388/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:3501689/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 1:792876/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCA < 2:2157222/50‑1 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 2:3715017/1‑48 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG > 1:4622164/1‑50 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 2:5505027/50‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:4097833/50‑1 CCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAG < 1:985028/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:1180715/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTG < 1:1772214/50‑1 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 2:2520578/1‑49 GCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGT > 1:2064184/1‑49 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:1573646/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:4217755/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:4216466/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA < 2:1065579/50‑1 CAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGA > 2:1133438/1‑50 GCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACT > 1:5070031/1‑50 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT < 2:2578497/50‑1 CGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 2:3978113/1‑50 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 2:1281557/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 2:2483991/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 1:4003981/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTA < 2:1730981/50‑1 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:4676856/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 2:1376893/1‑50 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 2:2889938/50‑1 TAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC < 1:3693901/50‑1 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:2603766/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:4867498/1‑50 GAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 2:2175258/49‑1 AACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 1:2079107/50‑1 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |