| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 163 [0] | [0] 160 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 156 (1.030) | 73/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 156 total aligned reads displayed.
GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 2:180203/1‑49GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 2:1704722/1‑49GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:2309308/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 2:3809360/1‑50 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:3393110/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:955647/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:2759328/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 2:2345547/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:3799257/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 2:4072209/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 2:1560704/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 2:1454759/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 2:5209773/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:2797695/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 2:3013706/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:5438991/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 2:4612868/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 2:3211866/1‑50 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 2:832091/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 2:3959103/1‑50 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2576034/1‑49 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4864408/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:690304/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4297489/1‑48 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:3560971/1‑48 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATTCCGGACA < 2:5645160/49‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:998678/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 2:2746635/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:636903/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:4799052/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:950427/1‑48 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 2:3338665/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:2923534/49‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 2:5510755/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA < 2:2575124/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:5781974/49‑1 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:2425141/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 2:2125363/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 2:1283981/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3003645/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:2106990/48‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:5076400/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 2:4080847/50‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:4978870/49‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 2:3563745/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:5111425/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:644422/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 2:2798557/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 2:2058332/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:5707768/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:5459122/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 2:4519243/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 2:2361604/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:1556804/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 2:4464817/49‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 2:1900661/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:2302250/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 2:2045340/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:4118427/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 2:4900286/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 2:703343/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 2:4158566/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTACCAGGCATTCGTT < 2:4220552/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:4283254/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:3091687/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 2:5240556/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:4735299/1‑49 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 2:4487854/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:4097284/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 2:2456546/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 2:663938/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3977921/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:4572631/50‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:4677441/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1757680/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:3242133/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 2:486902/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 2:3709918/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 2:4721360/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 2:3523188/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 2:5580440/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:5722167/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 2:3981589/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:3701272/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:3718891/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAAGAT < 2:2571556/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 2:5514150/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1419607/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 2:4116845/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:2553334/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 2:3319842/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 2:325049/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:3174112/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:2058880/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 2:5353128/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 2:2671115/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:1159950/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:4604644/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:770197/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:3822795/49‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362114‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |