| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 78 [0] | [0] 78 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 75 (0.530) | 55/92 | 0.1 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > NC_000913/3469854‑3469901 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:573754/50‑1AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:3097388/50‑1AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:5447251/50‑1 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATT < 1:551513/50‑1 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 2:2691674/1‑49 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA < 1:3726305/50‑1 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:737079/1‑50 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA < 1:1619189/50‑1 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 2:4316722/1‑50 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 2:5023598/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 2:4449797/50‑1 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:5576979/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:1686230/1‑50 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 1:3368427/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 2:5540818/49‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:1906928/49‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:4692686/50‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:1802571/50‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 2:4227019/50‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 2:5432981/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 2:1553140/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 2:1575786/50‑1 TGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:3402036/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 2:3307536/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:3333029/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT < 2:585332/50‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC < 2:1862289/48‑1 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:1716198/1‑50 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 2:3506454/1‑50 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:3081207/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 1:5026153/1‑50 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 2:140587/1‑50 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 2:1873690/1‑49 TTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT > 2:1698532/1‑49 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 2:5390089/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 2:77340/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:3818365/48‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:188274/47‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 2:3699017/49‑1 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:2620829/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:2479781/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA < 2:451874/49‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 2:4227000/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:1224196/1‑49 CACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:5636410/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA < 2:4963316/50‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAA < 1:2885223/49‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:3782639/48‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT > 2:179883/1‑50 CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG < 1:1327240/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC < 2:2043062/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 2:3035075/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:704736/50‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:1125287/50‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 2:4006378/1‑50 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAGAAC < 2:1861575/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 2:2825009/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 2:4151405/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:4475634/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:6289/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 2:226686/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 2:3097480/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 2:1251589/1‑48 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT < 1:1507940/50‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:4967744/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 2:2268061/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:583795/1‑49 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:2416836/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:1651160/49‑1 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:376591/49‑1 AAACATTATATTCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 2:857621/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:4885355/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:3428155/49‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:4093124/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 2:2987202/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 2:1187487/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 2:78493/1‑49 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:4510654/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:570319/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 2:4350437/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 2:329623/50‑1 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453877‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG > NC_000913/3469854‑3469901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |