| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 99 [0] | [0] 97 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 93 (0.630) | 58/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > NC_000913/3625680‑3625727 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTT < 1:5654616/50‑1GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:1361197/1‑49GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 2:2851958/1‑49 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA > 2:5525841/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:5431569/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 1:5479949/50‑1 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:5510439/1‑50 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC < 2:5626780/50‑1 GGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTAC > 1:1881535/1‑50 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCC < 2:3374217/50‑1 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 2:1898916/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:5808986/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:583864/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:3520007/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 2:5831187/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1344449/1‑49 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:1408339/1‑49 GCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT > 2:5122979/1‑50 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT < 2:300027/50‑1 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATT < 2:5175326/50‑1 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT < 2:1349888/49‑1 CGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCAT < 1:1734751/49‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 2:499388/1‑50 CACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTC > 1:560472/1‑50 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:2739436/50‑1 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 2:5213337/1‑50 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC < 1:5844328/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 2:1783120/1‑49 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 2:3816176/1‑49 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:2672099/1‑49 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAA < 2:1285237/50‑1 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAA > 1:4960297/1‑50 GCATTTGCAGTGCTTGCCGAAGGCAGATTGAGTTACGCCATTGTCCCAAT > 2:266183/1‑50 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT > 1:5285465/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 2:1082177/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC < 2:3535874/50‑1 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGGTACGCCATTGTCCCAATC > 1:1139701/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 2:326394/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 2:5312350/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:1074079/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 2:2893226/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 2:4715521/1‑50 TTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC > 1:4849248/1‑50 TTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC > 2:4653928/1‑50 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTC < 1:3606012/49‑1 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT > 2:1331611/1‑50 GCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT < 1:3744029/49‑1 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC > 2:4343617/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTC < 2:1246999/50‑1 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:3906341/1‑50 AGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCC > 1:4671322/1‑50 GTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:3654334/1‑50 GTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT < 1:1297854/50‑1 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 2:2811931/1‑49 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTGCCTG < 2:11664/50‑1 GCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG > 1:3147065/1‑49 GCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG > 1:3044699/1‑49 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 2:4084696/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA < 1:1430327/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:2332595/1‑50 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:2352515/1‑50 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 2:3033889/1‑50 TGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC > 2:3991092/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 2:722420/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 2:5552009/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:712865/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:4063475/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:4638254/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:3395407/48‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 2:5149043/49‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:4190595/1‑49 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 2:1859824/49‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCA < 1:5035534/50‑1 CGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:5792778/1‑48 GAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:3798093/1‑50 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGC < 1:55694/50‑1 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGC < 1:5648303/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 2:1737826/1‑48 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 2:5704560/1‑48 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG < 2:2959239/50‑1 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGC < 2:987544/50‑1 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCTTGAATCGCAGCAGCG > 2:2640887/1‑50 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG < 2:966426/50‑1 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG < 1:2380603/50‑1 AGATTGAGTTACGCCATTGTCCAAATCGTCTTCCTGAATCGCAGCAGCG > 2:4924063/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 1:4953125/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGC > 2:69749/1‑49 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA < 1:23875/50‑1 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 1:1825917/1‑50 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 2:1156554/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGGGCAAT < 2:2894007/50‑1 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT > 2:3678312/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 2:183549/50‑1 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT > 2:4599302/1‑50 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG > 1:1319348/1‑50 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 2:150932/1‑49 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 2:537193/1‑49 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 2:161124/1‑49 TTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > 2:3368422/1‑49 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618943‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGTG > NC_000913/3625680‑3625727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |