| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 146 [0] | [0] 153 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 139 (0.920) | 69/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
Only 100 of 139 total aligned reads displayed.
ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > NC_000913/4325166‑4325213 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGA > 2:381160/1‑50 CGGGACCTGCCTGATACCCGGCCCCCCGCGATTTCATCAACTGAATGGAT < 2:505497/50‑1 CGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGAT < 2:2664007/50‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG < 1:406433/50‑1 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 2:3326267/1‑50 GGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATG > 1:562808/1‑50 GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGC < 1:1320029/50‑1 GGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGC < 1:1329715/50‑1 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 2:4346460/50‑1 GACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCA < 2:2155318/50‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG > 2:1280934/1‑50 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG > 1:1873318/1‑50 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:2960184/50‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:4435831/50‑1 ACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAG < 1:315062/50‑1 CCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGC < 2:5360315/50‑1 CTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCC > 2:3440300/1‑50 TGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT > 2:5335939/1‑50 GCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC > 1:3192429/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCC > 1:1023547/1‑50 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC < 1:5511353/49‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTC < 1:3859768/49‑1 CCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCT < 1:4309483/48‑1 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:2589686/1‑50 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 2:4068547/1‑50 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 2:5256571/1‑50 CTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 2:809786/1‑50 TGATACCCACCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCC > 1:4435967/1‑49 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAA < 1:598463/50‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTA > 2:5265956/1‑49 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:634591/48‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:5837279/48‑1 ATACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCT < 1:5344741/48‑1 TACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA < 2:3808035/50‑1 TACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA < 1:4823025/50‑1 ACCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAA > 1:5180591/1‑49 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAA < 1:2522090/50‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA > 2:3182648/1‑49 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 1:3787593/49‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 2:2513854/49‑1 CCCGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAA < 2:1702953/49‑1 CGCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAG < 1:1015295/50‑1 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT < 1:3051934/50‑1 GCCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGT > 1:1106799/1‑50 CCGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTG < 1:580929/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 1:3737149/50‑1 CGCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGG < 2:4642940/50‑1 CGCCCAGCGATTTCATCAACTCAATGGATGCAGCCTCCCTAAAAAAGCGG > 2:4724527/1‑50 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGC < 1:4825384/50‑1 GCCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGCGGC > 1:3345754/1‑50 CCCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCT > 1:3663377/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:5718385/50‑1 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC > 1:770944/1‑50 CCAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTC < 1:2054238/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 2:4323417/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 1:5241238/50‑1 CAGCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCC < 2:489846/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 2:3892725/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 1:1378305/50‑1 GCGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCAT < 2:3661883/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 1:1592323/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 2:4589792/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC > 2:4039608/1‑50 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 2:1210145/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 2:1172523/50‑1 CGATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATC < 2:4305632/50‑1 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT > 1:356636/1‑50 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT < 1:4299508/50‑1 ATTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGT < 1:5054215/50‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG < 2:838041/50‑1 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:20429/1‑50 TTTCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTG > 1:3996152/1‑50 TCATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC > 1:3652323/1‑50 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC < 1:1498490/49‑1 CATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGC < 2:3307818/49‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGG < 2:3897863/50‑1 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 2:322636/1‑49 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG > 2:4563986/1‑49 ATCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCG < 1:1523995/49‑1 TCAACTGACTGGATGCAGCCTTCCTAAAAAAGTGGCTCCATCGTGGCGGA < 1:5360095/50‑1 TCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGA < 1:739568/50‑1 TCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGA < 2:710182/50‑1 TCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGA < 2:4069580/50‑1 TCAACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGA < 2:1340044/50‑1 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 2:5591204/1‑49 AACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGAT > 2:2671271/1‑49 ACTGAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTA < 2:1703251/50‑1 GAATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG > 2:5390471/1‑50 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 2:2633738/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 2:1613726/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 2:1446656/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGT < 1:3856342/50‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:3064440/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTG < 1:544641/49‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:461009/48‑1 AATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATT < 1:3883248/48‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTGTTGTG < 2:5137789/50‑1 ATGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTG < 2:5238408/50‑1 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > 1:1921086/1‑50 TGGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA < 1:4216773/50‑1 ACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4299580‑4299627‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGA > NC_000913/4325166‑4325213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |