| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 240 [0] | [0] 243 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 233 (1.570) | 89/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 239 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 2:33796/50‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:190486/49‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:1046664/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG > 2:2212635/1‑49 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 2:4543106/1‑50 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA < 2:4052497/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA < 1:1423462/49‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA < 2:5235509/49‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 2:3648738/1‑50 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:792305/50‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 2:5353550/1‑50 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 2:1505612/1‑49 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 2:4908268/1‑49 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 2:5649713/1‑49 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 2:4772659/1‑50 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:1946182/49‑1 TTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:4362477/1‑49 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 2:1908847/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 2:3873095/1‑48 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:3730338/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:969147/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 2:5013493/1‑49 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:4679956/1‑49 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 2:431878/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 2:5192580/1‑50 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:600570/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:248415/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 1:3269293/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 2:2514202/1‑50 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 2:5756932/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 2:3050398/1‑50 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 1:4470119/1‑50 TCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT > 1:122510/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:2343551/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG < 1:398977/50‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:4154561/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAGCACAGGACATTG < 1:3594824/50‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:5103762/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 2:122425/50‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 2:388547/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 2:4859763/1‑50 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:1643110/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 2:1769915/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:2360617/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:3455617/1‑49 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 2:1196864/1‑50 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 2:3468702/49‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 2:472206/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT > 2:4456998/1‑50 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT > 2:1040872/1‑50 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:4816862/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:5023044/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:1486063/49‑1 TGTACCAACAGGGAGGGAATACGGGAAATCACAGGCCCTTGCTAATGC > 2:3666097/1‑48 TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 2:2865499/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:2625007/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 2:4157757/49‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:5318944/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:2096391/49‑1 ACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA > 1:1434612/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:5311774/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 2:5125442/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:5794592/49‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:2998223/50‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:3313827/1‑50 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:4629156/1‑50 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 2:699292/1‑50 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:2030814/1‑49 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 2:112143/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 2:3827125/50‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 2:5338613/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC > 2:1603363/1‑49 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 2:4147344/1‑50 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 2:780138/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:320176/1‑50 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:5677063/1‑50 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 2:3334627/1‑49 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 2:2730556/1‑49 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 2:2038942/1‑49 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:1653518/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 2:4942684/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:1086318/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:3144915/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:5534273/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 2:3242733/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:2706296/1‑50 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:4418484/1‑50 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC > 1:5427488/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 2:254569/1‑50 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:274701/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 2:647683/50‑1 AATACGAGAAATCAAAGGACATTGCTAATGCTGGTACGCAATCTTACCTG < 2:3611813/50‑1 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGA < 2:2465539/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 2:1625427/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC < 2:4381077/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:2254051/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 1:5644172/49‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 1:1872185/49‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:2790531/50‑1 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT > 2:3584395/1‑49 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |