| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 191 [0] | [0] 193 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 171 (1.260) | 75/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 191 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGAT > NC_000913/565005‑565102 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:2751419‑M1/50‑1 (MQ=255)aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:2294871‑M1/50‑1 (MQ=255)aTCAGCCAGCTTGCCCAGGTGGGTCTGAGGTCATGGAAACGGAAATCTTC > 2:2474599‑M1/1‑50 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc > 1:5413789‑M1/1‑49 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc > 2:5329569‑M1/1‑49 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 2:4520065‑M1/50‑2 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 2:1572417‑M1/49‑3 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 2:5664323‑M1/49‑3 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 2:354131‑M1/1‑47 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 2:941575‑M1/1‑45 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:4162908‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 2:4803219‑M1/50‑7 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt < 2:5505280‑M1/50‑7 (MQ=255) cagcTTGCCCAGGCGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:4912084‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:4653272‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 2:638979‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 2:5701538‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:1897169‑M1/1‑43 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 2:2878358‑M1/1‑43 (MQ=255) gcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattta > 1:1823240‑M1/1‑42 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGCAACGGAAATCTTCctcatttat > 2:1358791‑M1/1‑41 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:238391‑M1/1‑41 (MQ=255) ttGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg > 2:5168682‑M1/1‑40 (MQ=255) tGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgc > 2:1660558‑M1/1‑39 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:2949075‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:539511‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 2:5035941‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 2:1465895‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 2:3783717‑M1/48‑11 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc > 2:129542‑M1/1‑37 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 2:2782047‑M1/50‑15 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:2094787‑M1/1‑34 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 1:3506776‑M1/50‑18 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:5234866‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 2:835949‑M1/1‑32 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:1132327‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:3161895‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:5707841‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:2538139‑M1/50‑20 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta < 1:2042037‑M1/50‑20 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatc < 1:3274365‑M1/50‑22 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 2:598836‑M1/49‑21 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:3006434‑M1/49‑21 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 2:3852733‑M1/1‑28 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 2:3412558‑M1/1‑28 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 2:5289208‑M1/49‑23 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:4717319‑M1/1‑26 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 2:825436‑M1/1‑26 (MQ=255) gAGGTCATGGCAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 2:2957423‑M1/1‑24 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc < 1:3582187‑M1/50‑28 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:2529252‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt < 1:1513905‑M1/49‑27 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 2:4255830‑M1/47‑25 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 2:1002072‑M1/47‑25 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 2:1659034‑M1/1‑22 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc > 2:252236‑M1/1‑22 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg > 2:184266‑M1/1‑21 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 2:3926589‑M1/50‑30 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:2641704‑M1/1‑19 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:3860934‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 2:5121843‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt > 2:495190‑M1/1‑18 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:2514917‑M1/49‑32 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:231605‑M1/49‑32 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 2:5735568‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt > 1:336510‑M1/1‑17 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccggcttatccgtttccgcttt < 2:4884848‑M1/50‑34 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttg < 2:4434796‑M1/49‑35 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 2:3164190‑M1/1‑14 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 2:3049950‑M1/1‑14 (MQ=255) aaaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcc > 1:674122‑M1/1‑14 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 2:1117676‑M1/1‑13 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 1:3648030‑M1/1‑12 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 2:4517295‑M1/50‑39 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 1:5112601‑M1/1‑12 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 2:1281348‑M1/1‑12 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgccttgccctt < 1:4412177‑M1/50‑40 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:2789662‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:3877439‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:4516590‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:1730146‑M1/1‑10 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:4851032‑M1/1‑10 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:5524455‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca > 1:1411737‑M1/1‑9 (MQ=255) gAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttca < 1:3226987‑M1/50‑42 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 2:5306425‑M1/1‑8 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:5340420‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 2:3988832‑M1/1‑7 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:1030541‑M1/1‑7 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 2:477543‑M1/50‑45 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:3790169‑M1/1‑6 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:889802‑M1/50‑45 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 2:5764663‑M1/1‑6 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:3339679‑M1/50‑45 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 2:5202937‑M1/1‑4 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 2:3116398‑M1/1‑4 (MQ=255) cTTCctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca > 2:2062554‑M1/1‑4 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 2:2312914‑M1/1‑3 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 2:1601278‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:671143‑M1/47‑47 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGAT > NC_000913/565005‑565102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |