| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 163 [0] | [0] 160 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 155 (1.040) | 72/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 163 total aligned reads displayed.
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGG > NC_000913/3184732‑3184830 | cGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:746734‑M1/50‑1 (MQ=255)cGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:2181874‑M1/50‑1 (MQ=255) gCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATa < 1:5528297‑M1/50‑2 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat < 2:2776769‑M1/50‑3 (MQ=255) cTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATat < 2:5332327‑M1/50‑3 (MQ=255) tAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:5631696‑M1/1‑47 (MQ=255) aaTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:3259160‑M1/1‑46 (MQ=255) aaTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatc > 1:4084949‑M1/1‑46 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 2:4195448‑M1/50‑6 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 1:1251534‑M1/50‑6 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 1:3655838‑M1/50‑6 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatcta < 1:3881761‑M1/50‑6 (MQ=255) aTGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatct < 2:3029462‑M1/49‑5 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa < 1:2012221‑M1/50‑7 (MQ=255) tGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaa < 1:5301727‑M1/50‑7 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 2:5354908‑M1/50‑9 (MQ=255) aTTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata < 2:2332045‑M1/50‑9 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac < 1:724527‑M1/50‑10 (MQ=255) ttAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaata > 1:4666829‑M1/1‑41 (MQ=255) tAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatac > 1:123873‑M1/1‑40 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca > 2:385731‑M1/1‑39 (MQ=255) aGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaataca < 1:1856303‑M1/49‑11 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa < 1:2446192‑M1/50‑13 (MQ=255) gCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaaaacaaa < 2:5413579‑M1/50‑13 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 1:1574839‑M1/50‑14 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaac < 2:4282341‑M1/50‑14 (MQ=255) cGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaa > 1:3369706‑M1/1‑37 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca > 1:1675028‑M1/1‑36 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca > 1:305136‑M1/1‑36 (MQ=255) ggCAGCAACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaaca < 1:2729515‑M1/50‑15 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 2:2005168‑M1/50‑17 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact < 2:1795941‑M1/50‑17 (MQ=255) cagcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacac > 2:606699‑M1/1‑34 (MQ=255) agcaACGCATAGCTTCACATACTTCTCGTTTATatctaatacaaacactc > 1:4827525‑M1/1‑33 (MQ=255) agcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacact > 2:4795229‑M1/1‑33 (MQ=255) gcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa < 2:616981‑M1/50‑19 (MQ=255) gcaACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaa < 1:1899161‑M1/50‑19 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 2:4329085‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:3755862‑M1/50‑20 (MQ=255) caACGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaa < 1:5685477‑M1/50‑20 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 1:3877726‑M1/50‑21 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 1:402920‑M1/50‑21 (MQ=255) aaCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaa < 2:3381589‑M1/50‑21 (MQ=255) aCGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaac < 1:146207‑M1/50‑22 (MQ=255) cGCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:966775‑M1/50‑23 (MQ=255) cGCAAAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacg < 1:3498109‑M1/50‑23 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 2:1226673‑M1/1‑27 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg > 1:3950828‑M1/1‑27 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 2:4571823‑M1/50‑24 (MQ=255) gCATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgg < 2:541433‑M1/50‑24 (MQ=255) cATAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacggg < 1:2651933‑M1/50‑25 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc < 1:5035928‑M1/50‑26 (MQ=255) aTAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc > 2:2512183‑M1/1‑25 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcc < 1:3394475‑M1/50‑27 (MQ=255) tAGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggc > 1:2194608‑M1/1‑24 (MQ=255) aGCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca > 1:1012642‑M1/1‑23 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat < 2:5237349‑M1/50‑29 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat < 1:2963577‑M1/50‑29 (MQ=255) gCTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggcca < 2:1511255‑M1/49‑28 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatc < 1:41175‑M1/50‑30 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatc < 2:2654880‑M1/50‑30 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccatc < 2:3826382‑M1/50‑30 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 1:4602599‑M1/1‑21 (MQ=255) cTTCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 2:2708565‑M1/1‑21 (MQ=255) ttCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 2:1327445‑M1/1‑20 (MQ=255) ttCACATAATTCTGGTTTATatctaatacaaacactaaaacgggccat > 2:2916101‑M1/1‑20 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 2:3207060‑M1/48‑31 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 2:124848‑M1/48‑31 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:4243552‑M1/48‑31 (MQ=255) cacaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatca < 1:1657355‑M1/48‑31 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggc > 1:3739238‑M1/1‑17 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggc < 1:5575359‑M1/50‑34 (MQ=255) acaTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcagg < 2:801319‑M1/49‑33 (MQ=255) caTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcc > 2:1607291‑M1/1‑16 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc < 2:2465476‑M1/50‑36 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc < 2:2824386‑M1/50‑36 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc < 2:689534‑M1/50‑36 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc < 1:1471528‑M1/50‑36 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 1:352444‑M1/1‑15 (MQ=255) aTAATTCTGGTTTATatctaatacaaacactaaaacgggccatcaggccc > 2:4616553‑M1/1‑15 (MQ=255) aaTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 2:2224850‑M1/1‑13 (MQ=255) aaTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:1705654‑M1/1‑13 (MQ=255) aaTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:2883229‑M1/1‑13 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtt < 1:2271371‑M1/50‑39 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt < 2:2263197‑M1/49‑38 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt < 1:1776279‑M1/49‑38 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 1:3257221‑M1/1‑12 (MQ=255) aTTCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgt > 2:1496217‑M1/1‑12 (MQ=255) ttCTGGTTTATatctaatacaaacactaaaacgggccatcaggcccgtta > 2:5304229‑M1/1‑11 (MQ=255) tGGTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:223586‑M1/1‑8 (MQ=255) tGGTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat > 1:892867‑M1/1‑8 (MQ=255) gTTTATatctaatacaaactctaaaacgggccatcaggcccgttata < 2:3136142‑M1/47‑42 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttatat < 1:1080892‑M1/48‑43 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttata < 1:2128189‑M1/47‑42 (MQ=255) gTTTATatctaatacaaacactaaaacgggccatcaggcccgttata < 1:901899‑M1/47‑42 (MQ=255) tttATatctaatacaaacactaaaacgggccatcaggcccgttatatcag < 1:3315578‑M1/50‑46 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgc > 1:2780029‑M1/1‑2 (MQ=255) atatctaatacaaacactaaaacgggccatcaggcccgttatatcagtg < 1:1132666‑M1/49‑48 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgct < 1:4490073‑M1/50‑50 (MQ=255) tatctaatacaaacactaaaacgggccatcaggcccgttatatcagtgct > 2:5257072‑M1/1‑1 (MQ=255) | CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATGACTTACCCTTATCGCACTACAATGGCACTCAACACCTATCAGTACAGG > NC_000913/3184732‑3184830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |