| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 191 [0] | [0] 187 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 180 (1.210) | 78/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 191 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:5650843‑M1/49‑1 (MQ=255) ttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 2:339889‑M1/1‑48 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:4380680‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 2:4354113‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 2:145743‑M1/49‑4 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1080688‑M1/1‑45 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc < 1:5504912‑M1/50‑6 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc < 2:5152080‑M1/50‑6 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg < 2:2993535‑M1/50‑7 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:241359‑M1/1‑44 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:1792286‑M1/1‑44 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:323310‑M1/1‑44 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:15478‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:3304633‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:1252029‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:5465275‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:775445‑M1/1‑43 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:2834612‑M1/1‑41 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:5825881‑M1/1‑41 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:3310251‑M1/1‑41 (MQ=255) tCTGAATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 2:5393799‑M1/1‑41 (MQ=255) cTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 2:2029584‑M1/1‑40 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 2:2480054‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 2:889680‑M1/47‑11 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 1:72390‑M1/47‑11 (MQ=255) ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 2:647466‑M1/1‑36 (MQ=255) ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:692789‑M1/1‑36 (MQ=255) tgaccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt < 2:2953344‑M1/47‑15 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta < 2:1599230‑M1/50‑16 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:4404733‑M1/50‑16 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt > 2:2202192‑M1/1‑35 (MQ=255) aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:3665881‑M1/1‑34 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa < 2:5420486‑M1/50‑18 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa < 2:4439037‑M1/50‑18 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaa < 2:5827110‑M1/49‑17 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:312582‑M1/1‑33 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:5834244‑M1/1‑33 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag > 1:2174675‑M1/1‑32 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag > 1:845748‑M1/1‑32 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:4187257‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:1736187‑M1/1‑31 (MQ=255) gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg > 2:3976375‑M1/1‑29 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc < 1:3293813‑M1/50‑23 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 2:4044602‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc < 2:5029243‑M1/50‑23 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:1239596‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:4770743‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 1:716576‑M1/48‑21 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcc < 1:1052092‑M1/50‑24 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 2:1669199‑M1/1‑27 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:5150640‑M1/50‑25 (MQ=255) gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat > 2:691917‑M1/1‑25 (MQ=255) gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat > 1:1027124‑M1/1‑25 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgtgattattaatgttgccatg > 2:488075‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg < 1:485598‑M1/50‑27 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg < 2:5778575‑M1/50‑27 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 2:457815‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg < 2:3883032‑M1/50‑27 (MQ=255) tAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:2115467‑M1/1‑23 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc < 2:1523222‑M1/49‑28 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag < 1:975958‑M1/50‑30 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:3037518‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:5007077‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 2:4487836‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:3501861‑M1/49‑29 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc < 1:5701674‑M1/50‑31 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc < 1:4506282‑M1/50‑31 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc > 2:1082896‑M1/1‑20 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt < 2:3353922‑M1/50‑33 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt > 1:2501359‑M1/1‑18 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg < 2:2358803‑M1/49‑32 (MQ=255) tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc > 1:528038‑M1/1‑17 (MQ=255) cATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc > 2:4286641‑M1/1‑16 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg < 2:5585942‑M1/50‑36 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg < 2:4043933‑M1/50‑36 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 2:1855275‑M1/49‑35 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:1432798‑M1/48‑34 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:3082431‑M1/48‑34 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 2:3706126‑M1/1‑11 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 1:351149‑M1/1‑11 (MQ=255) ccTGGTAGTaaggcgagattattacagttgccatgcagcgtccggggaag > 1:2119668‑M1/1‑9 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 2:3185888‑M1/49‑41 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg < 1:2593653‑M1/47‑39 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 2:4774903‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 2:5127664‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 2:1750348‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:2706256‑M1/50‑43 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt > 1:1437512‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:435457‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtg < 2:1151278‑M1/48‑44 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg < 2:3792240‑M1/50‑47 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg > 1:1427495‑M1/1‑4 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg > 1:5188554‑M1/1‑3 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg > 1:2334896‑M1/1‑2 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg > 1:2927989‑M1/1‑2 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:3854763‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 2:4096892‑M1/49‑48 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 2:2845193‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:50958‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 2:2505851‑M1/50‑50 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |