| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,846,301 | Δ20,968 bp | [hycE]–[rpoS] | 21 genes [hycE], hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN, [rpoS] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2846301 | 2867268 | 20968 | 92 [7] | [9] 95 | [hycE]–[rpoS] | [hycE],hycD,hycC,hycB,hycA,hypA,hypB,hypC,hypD,hypE,fhlA,ygbA,mutS,pphB,ygbI,ygbJ,ygbK,ygbL,ygbM,ygbN,[rpoS] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2846300 | 7 (0.050) | 76 (0.530) | 40/92 | 0.5 | 90.7% | coding (172/1710 nt) | hycE | formate hydrogenlyase subunit HycE |
| ? | NC_000913 | 2867269 = | 9 (0.060) | coding (283/993 nt) | rpoS | RNA polymerase, sigma S (sigma 38) factor | |||||
TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 | ttGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGat < 1:4360813/50‑1 (MQ=255)cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 2:2926668‑M2/50‑50 (MQ=255)cggcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgat > 1:2512201‑M2/50‑50 (MQ=255) gcgtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatca < 1:1251599‑M2/3‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 2:43013‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:1255152‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc < 2:3852949‑M2/5‑1 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:4878193‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 1:4471853‑M2/46‑50 (MQ=255) gtaatgaccattcagtttgcgttcgtcgttaccaaacagcaccgatcatc > 2:4891500‑M2/46‑50 (MQ=255) taatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATcc < 1:1643005‑M2/6‑1 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 2:425980‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 2:4199295‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:2300496‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcg > 1:5429715‑M2/44‑50 (MQ=255) aatgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATAcg > 2:15297‑M2/44‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 2:3541046‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:1013565‑M2/43‑50 (MQ=255) atgaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcgg > 1:1799827‑M2/43‑50 (MQ=255) gaccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCcggcg > 2:2372625‑M2/41‑50 (MQ=255) cggctgGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggcg < 2:785750/50‑1 (MQ=255) ggcggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggcgg < 2:3013697/50‑1 (MQ=255) ggcggGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCcggcgg < 2:3439255/50‑1 (MQ=255) ccattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:3253553‑M2/39‑50 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 2:4588118‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:682022‑M2/38‑49 (MQ=255) cattcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 2:3992332‑M2/38‑49 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 2:3264853‑M2/37‑48 (MQ=255) attcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 2:2127515‑M2/37‑48 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:5280728‑M2/36‑47 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 2:3076072‑M2/36‑47 (MQ=255) ttcagtttgcgttcgtcgttaccaaacagcaccgaTCATCCggcggc > 1:190028‑M2/36‑47 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:3594942‑M2/32‑50 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc < 2:2676101‑M2/19‑1 (MQ=255) gtttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 2:4055161‑M2/32‑50 (MQ=255) tttttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGc > 2:2589981/1‑49 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:786297‑M2/31‑49 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 2:1745555‑M2/31‑49 (MQ=255) tttgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGc > 1:1212949‑M2/31‑49 (MQ=255) ttttACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGa > 2:1069384/1‑50 (MQ=255) tgcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGa > 2:138264‑M2/29‑49 (MQ=255) gcgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACa > 2:3397785‑M2/28‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGGGTCGACAt > 2:206810‑M2/27‑50 (MQ=255) cgttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAt > 1:3857658‑M2/27‑50 (MQ=255) gttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtc > 2:5644158‑M2/26‑50 (MQ=255) ttcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtct > 1:836991‑M2/25‑50 (MQ=255) tcgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 2:755258‑M2/24‑50 (MQ=255) cgtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACAtctc > 1:612893‑M2/23‑49 (MQ=255) accaGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACAtctc > 2:471073/1‑49 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 2:3879016‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:1119385‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:2934206‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:3643015‑M2/22‑50 (MQ=255) gtcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCa > 1:4965898‑M2/22‑50 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc < 2:5213710‑M2/30‑1 (MQ=255) tcgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCAc > 1:4085180‑M2/21‑50 (MQ=255) caGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCAc < 2:961123/50‑1 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 2:4090792‑M2/20‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:4947749‑M2/20‑50 (MQ=255) cgttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 2:303865‑M2/20‑50 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:5740458‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 2:5715850‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 1:2397609‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg < 1:2768286‑M2/31‑1 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg > 2:2792249‑M2/19‑49 (MQ=255) gttaccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACg < 2:3951168‑M2/31‑1 (MQ=255) aCGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCa < 1:5518074/50‑1 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 1:1634790‑M2/34‑1 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAg < 2:606027‑M2/34‑1 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 1:3908424‑M2/16‑50 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 2:3558654‑M2/16‑50 (MQ=255) accaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGt > 2:4921200‑M2/16‑50 (MQ=255) ccaaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTg > 1:2125543‑M2/15‑50 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 2:3612599‑M2/14‑50 (MQ=255) caaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc > 2:5269519‑M2/14‑50 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg < 1:4811838‑M2/38‑1 (MQ=255) aaacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 2:572980‑M2/13‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 2:2205518‑M2/12‑50 (MQ=255) aacagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcgc > 2:1459022‑M2/12‑50 (MQ=255) acagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGcgcg < 1:1305396‑M2/40‑1 (MQ=255) cagcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 2:670793‑M2/10‑50 (MQ=255) agcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAc > 2:153387‑M2/9‑50 (MQ=255) gcaccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcg > 2:4877491‑M2/8‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:5777679‑M2/7‑50 (MQ=255) caccgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc > 1:5622572‑M2/7‑50 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 2:705628‑M2/4‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 2:317554‑M2/4‑49 (MQ=255) cgaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:609009‑M2/4‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 2:5164656‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:3545289‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 2:3486936‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:5044710‑M2/3‑49 (MQ=255) gaTCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCa > 1:115711‑M2/3‑49 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 2:4892478/1‑50 (MQ=255) tcatcCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaa > 2:2110589/1‑50 (MQ=255) | TTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAA > NC_000913/2867220‑2867318 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |