| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,070,462 | 0 | T | C | 28.3% | 178.0 / 95.1 | 113 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| Reads supporting (aligned to +/- strand): ref base T (34/47); new base C (21/11); total (55/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.59e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.81e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 125 total aligned reads displayed.
TGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCA > NC_000913/4070413‑4070508 | tGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCt > 2:4224591/1‑50 (MQ=255)tGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCt < 1:279725/50‑1 (MQ=255) gAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt > 2:3137301/1‑50 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt > 1:3179133‑M2/30‑50 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt < 1:5734429‑M2/21‑1 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt > 1:3807565‑M2/30‑50 (MQ=255) gggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCctt < 1:1109976‑M2/21‑1 (MQ=255) aGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCtt < 1:3562819/49‑1 (MQ=255) ggctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑g > 2:1459628‑M2/29‑50 (MQ=255) gctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑gg > 2:1416370‑M2/28‑50 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑gg < 1:4384093/50‑1 (MQ=255) ctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑ggg > 2:1072216‑M2/27‑50 (MQ=255) ctgcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑ggg > 1:4539803‑M2/27‑50 (MQ=255) cTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑ggg < 1:5149063/50‑1 (MQ=255) tGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCACGCCCCTTT‑ggg > 1:1469182/1‑49 (MQ=255) gcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑ggg > 2:5496144‑M2/25‑48 (MQ=255) gcaagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑ggg > 1:4416053‑M2/25‑48 (MQ=255) gATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑ggg > 1:1821485/1‑48 (MQ=255) caagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑gggg < 1:743489‑M2/25‑1 (MQ=255) aTGTCAAACCCAAAAACTGCTCCGGACGGTCCCCTCGCCCCTTT‑GGGgag < 2:3486940/50‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGgag < 2:5526767/50‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGgag < 1:3551624/50‑1 (MQ=255) aTGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGgag < 1:1867989/50‑1 (MQ=255) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGgaga < 2:4407643/50‑1 (MQ=255) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGgaga < 1:2741259/50‑1 (MQ=255) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGga > 2:1438074/1‑48 (MQ=255) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGga > 1:1124340/1‑48 (MQ=255) aagttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGga > 1:4733763‑M2/23‑48 (MQ=255) agttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGagag < 2:1072501‑M2/29‑1 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGagag < 2:634311/49‑1 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGagag < 2:3162040/49‑1 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAgg > 2:5419907/1‑50 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAgg < 1:4019592/50‑1 (MQ=255) tCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAgg > 2:5236909/1‑50 (MQ=255) gttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAgg < 2:443662‑M2/30‑1 (MQ=255) gttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAgg < 2:4756310‑M2/30‑1 (MQ=255) gttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAgg < 1:2314067‑M2/30‑1 (MQ=255) ttgcagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAggg > 1:1411786‑M2/20‑50 (MQ=255) cAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAggg > 1:5839500/1‑50 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAggg < 2:869169/49‑1 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGt > 2:4880676/1‑50 (MQ=255) aaaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGt < 1:1142336/50‑1 (MQ=255) aaCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGtt < 1:91652/50‑1 (MQ=255) cagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGtt < 2:5203458‑M2/33‑1 (MQ=255) cagaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGt > 2:3509031‑M2/17‑48 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTa < 2:2402160/50‑1 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTa < 2:1765102/50‑1 (MQ=255) aCCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTa < 1:1799953/50‑1 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGAAGAGGGTTAg < 1:74794/50‑1 (MQ=255) agaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTAg < 1:1419013‑M2/35‑1 (MQ=255) gaccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTAgg < 1:5765111‑M2/36‑1 (MQ=255) ccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAgg < 1:5032647/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAggg < 2:407162/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAggg < 2:4412235/50‑1 (MQ=255) cAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAggg < 2:4861838/50‑1 (MQ=255) ccgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt < 2:893577‑M2/38‑2 (MQ=255) aaaaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAgg > 1:3413273/1‑48 (MQ=255) aaaaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGga < 1:726617/50‑1 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTtagggtg < 2:343967‑M2/39‑3 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt > 2:487512‑M2/12‑48 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt > 1:1066655‑M2/12‑48 (MQ=255) cgttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt > 2:1678946‑M2/12‑48 (MQ=255) aaaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGgag < 2:3225180/50‑1 (MQ=255) aaaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGgag < 1:1206325/50‑1 (MQ=255) gttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt > 1:1096566‑M2/11‑47 (MQ=255) gttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt > 1:3669654‑M2/11‑47 (MQ=255) gttacgagatGGACGGTCCCCTCGCCCCCTT‑GGGGAGAGGGTTagggt > 2:4205453‑M2/11‑47 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGgaga < 1:2007120/50‑1 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGgaga < 2:5294350/50‑1 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGga > 2:3732481/1‑48 (MQ=255) aaaCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGga > 2:901521/1‑48 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAgg < 1:5738812/50‑1 (MQ=255) cTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAggg < 1:3779589/50‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGaaa < 2:4236907/50‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGaaa < 2:4148573/50‑1 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGaa > 1:95865/1‑49 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGaa > 2:392298/1‑49 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGaa > 1:1597373/1‑49 (MQ=255) cGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAAc > 2:2626116/1‑50 (MQ=255) cGGACGGTCCCCTCGCCCCTTT‑AGGGAGAGGGTTAGGGAGAGGGGAAAAc < 2:1840768/50‑1 (MQ=255) ggTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGCGAGGGGAAAACCCGCa > 2:2115430/1‑50 (MQ=255) gTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCAc > 1:2999008/1‑50 (MQ=255) tCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCAcc > 1:696314/1‑50 (MQ=255) ccccTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCAccc > 1:1058057/1‑50 (MQ=255) cccTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCAccc > 2:1747645/1‑49 (MQ=255) cccTCCCCCTTGT‑GGGGAGGGGGTGGGGGGGGGGGGAAAACCCGCACCCt < 1:291705/50‑1 (MQ=12) cccGCCCCTTT‑GGGGGGTGGGTAGGGGAGAGGGCAAAACCCGCACCCTAt < 2:747527/48‑1 (MQ=25) cTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAt > 1:3997313/1‑50 (MQ=255) gCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 1:2641604/1‑50 (MQ=255) cccccTTTGGGGGAGGGGGGGGGGGAGGGGGGAAAACCCGCACCCTAttt < 2:3468384/49‑1 (MQ=255) ccccTTTGGGGGAGGGGGGGGGGGAGGGGGTAAAACCCGCACCCTAtttt < 2:2901636/50‑1 (MQ=255) ccccTTT‑GAGGAGAGGGTAAGGGAGGGGGGAAAACCCGCGCCCTATTTTc < 2:1411024/50‑1 (MQ=25) ccTTTGGGGGGGGGGGTGAGGGGGGGGGGAAAACCCGCACCCTATTTTCa < 1:1230818/50‑1 (MQ=255) ccTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 2:2586157/1‑47 (MQ=255) ccTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 1:2196314/1‑47 (MQ=255) ccTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 2:4093021/1‑47 (MQ=255) cTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 1:4153632/1‑46 (MQ=255) cTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 1:5238214/1‑46 (MQ=255) ttt‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 2:5824624/1‑45 (MQ=255) ttt‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTAtttt > 2:4667149/1‑45 (MQ=255) | TGAGGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGGAGAGGGTTAGGGAGAGGGGAAAACCCGCACCCTATTTTCA > NC_000913/4070413‑4070508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |