| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 12,086 | C→T | intergenic (‑300/‑77) | yaaI ← / → dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 12,086 | 0 | C | T | 92.6% | 490.4 / 23.6 | 152 | intergenic (‑300/‑77) | yaaI/dnaK | DUF2541 domain‑containing protein YaaI/chaperone protein DnaK |
| Reads supporting (aligned to +/- strand): ref base C (4/7); new base T (81/57); total (88/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.22e-01 | |||||||||||
Only 100 of 152 total aligned reads displayed.
TTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGA > NC_000913/12038‑12134 | ttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg > 1:5327496/1‑50 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg < 1:1873144/49‑1 (MQ=255) tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt > 2:807940/1‑50 (MQ=255) agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt < 2:1354339/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt < 2:1918878/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt < 2:2827758/49‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt > 1:2557152/1‑49 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 2:2663578/50‑1 (MQ=255) gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg < 2:2896743/50‑1 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg > 2:2924279/1‑49 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg > 1:1520081/1‑49 (MQ=255) tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg > 1:1093126/1‑49 (MQ=255) agtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa > 2:2724486/1‑49 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa < 1:4795175/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa < 2:5461854/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa < 1:5025878/50‑1 (MQ=255) gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa < 1:217612/49‑1 (MQ=255) tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc > 2:3772764/1‑50 (MQ=255) aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAcc < 2:5121765/49‑1 (MQ=255) aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAg < 1:3854947/50‑1 (MQ=255) aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAg < 2:1584014/50‑1 (MQ=255) ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa > 1:4382743/1‑50 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc > 2:1680826/1‑50 (MQ=255) cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGAc < 2:4373285/50‑1 (MQ=255) gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg > 2:2649403/1‑50 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt > 2:662490/1‑50 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt < 2:2170904/50‑1 (MQ=255) cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt > 1:4140607/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 1:3296590/1‑50 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt < 2:548902/50‑1 (MQ=255) agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt > 1:2616699/1‑50 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt > 1:4237644/1‑50 (MQ=255) gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt < 2:3382244/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 2:2740287/50‑1 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc > 1:968791/1‑50 (MQ=255) tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc < 1:5832510/50‑1 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc > 1:84715/1‑50 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc < 1:858218/50‑1 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc < 1:2448527/50‑1 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc < 2:3547500/50‑1 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc < 1:4167282/50‑1 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc > 2:251029/1‑50 (MQ=255) gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc > 2:4678476/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc < 2:393380/50‑1 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc > 2:2932925/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc > 1:2901098/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc > 1:3534762/1‑50 (MQ=255) tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc < 1:889145/50‑1 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc > 2:4205765/1‑49 (MQ=255) agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt < 2:523388/50‑1 (MQ=255) agtCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGcccc > 1:570146/1‑49 (MQ=255) gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa > 1:2132609/1‑50 (MQ=255) gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa > 1:3123642/1‑50 (MQ=255) gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa < 2:5056841/50‑1 (MQ=255) tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt > 1:5176082/1‑50 (MQ=255) tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt > 2:5611639/1‑50 (MQ=255) tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt < 2:5380528/50‑1 (MQ=255) tCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTAt > 1:5102740/1‑50 (MQ=255) cTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt > 1:3186832/1‑49 (MQ=255) tGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:4376406/1‑50 (MQ=255) gtaaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:3297380/3‑49 (MQ=39) gCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:1807976/1‑49 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa < 2:5186174/48‑1 (MQ=255) cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa < 2:60633/48‑1 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 1:5315042/1‑47 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa > 2:4149840/1‑47 (MQ=255) aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAg < 2:4386399/50‑1 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa > 2:1252105/1‑50 (MQ=255) aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa > 2:477252/1‑50 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc > 2:3110689/1‑50 (MQ=255) aaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc > 2:1126639/1‑50 (MQ=255) aaaaaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGAc < 2:4507383/50‑1 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 1:1365875/1‑50 (MQ=255) aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 1:2358708/1‑50 (MQ=255) aaaaTGAAATTGGGGTGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 2:736564/1‑50 (MQ=255) aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt > 2:4235923/1‑49 (MQ=255) aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc < 1:365540/50‑1 (MQ=255) aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 1:2876322/1‑50 (MQ=255) aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACCca > 1:3710804/1‑50 (MQ=255) aaTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca > 2:5325058/1‑50 (MQ=255) aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac < 2:2374771/50‑1 (MQ=255) aTGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac < 2:3213742/50‑1 (MQ=255) tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca < 1:2285190/50‑1 (MQ=255) gAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa > 2:5700856/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc < 1:4482101/50‑1 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:3666018/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc < 2:3719308/50‑1 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:4102430/1‑50 (MQ=255) aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:3892459/1‑50 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc < 2:3864398/50‑1 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc < 1:5269586/50‑1 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc < 2:292424/50‑1 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:5090135/1‑49 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:1212952/1‑49 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:490451/1‑49 (MQ=255) aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc > 2:1380188/1‑49 (MQ=255) aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca < 2:1150090/50‑1 (MQ=255) ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac < 1:2250518/50‑1 (MQ=255) tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca > 1:3217558/1‑50 (MQ=255) gCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACatga > 2:2954838/1‑50 (MQ=255) | TTTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACATGA > NC_000913/12038‑12134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |