| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,154,362 | C→T | A84V (GCC→GTC) | mltG → | endolytic murein transglycosylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,154,362 | 0 | C | T | 84.9% | 412.5 / 56.5 | 146 | A84V (GCC→GTC) | mltG | endolytic murein transglycosylase |
| Reads supporting (aligned to +/- strand): ref base C (11/11); new base T (56/68); total (67/79) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.98e-01 | |||||||||||
Only 100 of 147 total aligned reads displayed.
TTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTGAAA > NC_000913/1154316‑1154411 | tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 2:4383330/1‑50 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 2:5391285/1‑50 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCg < 2:281671/49‑1 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCg < 2:3770165/49‑1 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg < 1:488036/49‑1 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg < 2:3745183/49‑1 (MQ=255) tCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCggg < 1:907001/49‑1 (MQ=255) tCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGa > 2:1862579/1‑50 (MQ=255) cAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGAc > 2:3295792/1‑50 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGAc < 1:362316/49‑1 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGAc < 1:387528/49‑1 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt > 2:2475693/1‑50 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACt > 1:2528171/1‑50 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACtt < 2:3941995/50‑1 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACt > 1:2420794/1‑49 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa < 1:5703410/50‑1 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa < 2:1995256/50‑1 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa < 1:861710/50‑1 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa < 2:5467205/50‑1 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAcc > 2:1629113/1‑50 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAc < 1:4346121/49‑1 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAc < 2:2708448/49‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:1002313/50‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:1697713/50‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:5834218/50‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg > 1:3875235/1‑50 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGc > 2:2264183/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 2:4238648/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:2288889/1‑50 (MQ=255) tgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:3316994/1‑49 (MQ=255) tgcGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCtt > 1:2775651/1‑49 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTac < 1:2020855/50‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa < 1:3338718/49‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCttt < 2:5657660/48‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 2:4528703/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 1:5334605/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca < 1:5026533/50‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 2:3208103/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTaca > 1:2361531/1‑50 (MQ=255) tATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTacac < 2:1395428/50‑1 (MQ=255) tATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTacac < 1:2587028/50‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 1:1784631/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 2:3857916/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg < 1:3497838/50‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACAcc < 1:4430108/49‑1 (MQ=255) cGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:2148273/1‑49 (MQ=255) cGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:1566431/1‑49 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 2:1601766/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:1209262/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:2516438/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:4631194/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCg > 1:1751955/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGc < 1:21824/49‑1 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAg < 2:5464165/50‑1 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAg < 2:4596314/50‑1 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCg > 1:5246170/1‑47 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 2:5080062/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 2:4289331/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:5719414/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGa < 2:1689164/50‑1 (MQ=255) aCCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGa < 1:4415662/50‑1 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt < 1:3509279/50‑1 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 2:3846384/1‑50 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt < 2:4194763/50‑1 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 2:5144886/1‑49 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATg < 2:4892160/50‑1 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa < 1:4942710/50‑1 (MQ=255) ggATCTTTCTCACTTTAAAGTAGGGACTTTCCGCTTTACACCGCAGATGa < 2:3550185/50‑1 (MQ=255) gATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAc < 1:1295525/50‑1 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 1:3145332/1‑50 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 2:29843/1‑50 (MQ=255) tCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCg > 1:193723/1‑50 (MQ=255) cTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt > 1:2773249/1‑50 (MQ=255) cTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt > 2:4415720/1‑50 (MQ=255) cTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt > 1:1658927/1‑50 (MQ=255) tttCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTg > 1:5019545/1‑50 (MQ=255) ttCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc > 2:4823012/1‑50 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc < 2:2876467/45‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc < 2:5826613/45‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCg < 1:33571/46‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt < 2:1364150/47‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc < 1:934289/49‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc < 1:3544041/49‑1 (MQ=255) cACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 2:2768074/1‑48 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc < 1:1359075/47‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCga < 2:814318/49‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCga < 2:2453239/49‑1 (MQ=255) aCTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc < 1:2430366/47‑1 (MQ=255) cTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCgaga < 2:5073806/50‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 2:1359630/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 1:5437043/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 2:4206950/48‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt < 2:2433724/48‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 2:3661147/49‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 2:3807273/49‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTg < 1:5452886/50‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTg < 2:4909464/50‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTg < 2:5577409/50‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTg < 2:3365000/50‑1 (MQ=255) ccGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTGaaa > 1:4910628/1‑50 (MQ=255) | TTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCTGAAA > NC_000913/1154316‑1154411 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |