BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,382,555	C→T	S203S (AGC→AGT)	ompG →	outer membrane porin G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,382,555	0	C	T	100.0%	707.1 / NA	172	S203S (AGC→AGT)	ompG	outer membrane porin G
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (79/93); total (79/93)

Only 100 of 172 total aligned reads displayed.

TTGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGCCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGC  >  NC_000913/1382508‑1382601

ttGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  2:4522279/1‑50 (MQ=255)

ttGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCg                                              >  1:5648363/1‑50 (MQ=255)

  gCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGc                                             >  2:1532463/1‑49 (MQ=255)

   cGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           <  1:953036/50‑1 (MQ=255)

   cGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCa                                            <  2:2537790/49‑1 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:424896/1‑49 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCaa                                           >  1:3363855/1‑49 (MQ=255)

    gAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          <  1:1750164/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          >  2:3201206/1‑49 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAAt                                          >  1:1367423/1‑49 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:1026190/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:816711/50‑1 (MQ=255)

     aGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATa                                         <  1:223723/50‑1 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        >  1:3088740/1‑50 (MQ=255)

      gTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATaa                                        <  1:4657891/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       <  2:70497/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       <  1:2738068/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       >  1:1481615/1‑50 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       <  1:4654451/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       <  1:4894927/50‑1 (MQ=255)

       tGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAAc                                       >  2:3059436/1‑50 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACgg                                     <  1:4738702/50‑1 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACgg                                     <  1:5701273/50‑1 (MQ=255)

         aaCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACg                                      <  2:3683670/49‑1 (MQ=255)

          aCTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:4437289/1‑50 (MQ=255)

           cTATTATCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTg                                   <  2:5223904/50‑1 (MQ=255)

            tattatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGt                                    >  1:5273035/1‑48 (MQ=255)

             attatATCGACCGCGGCTTCAATATGGACGCCAGTCGCAATAACGCTGAg                                 >  2:2847105/1‑50 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                <  1:2276296/50‑1 (MQ=255)

              ttatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGt                                <  2:1367055/50‑1 (MQ=255)

               tatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               >  1:4129741/1‑50 (MQ=255)

               tatCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               >  2:2162854/1‑50 (MQ=255)

                atCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               <  1:3474088/49‑1 (MQ=255)

                atCTCGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtt                               <  2:4933781/49‑1 (MQ=255)

                 tctcGAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtttt                             >  2:3598599/1‑50 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGtttt                             <  1:4809920/46‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTcc                           <  1:4168043/48‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTcc                           <  1:3986198/48‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTcc                           <  1:3962058/48‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTc                            <  2:1565814/47‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         <  2:478528/50‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         >  2:989655/1‑50 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         <  1:3968171/50‑1 (MQ=255)

                     gAGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCAc                         >  1:4354943/1‑50 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        >  2:900486/1‑50 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        <  1:3389515/50‑1 (MQ=255)

                      aGCGCGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACg                        >  1:116036/1‑50 (MQ=255)

                       gcgcGGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       <  2:4474986/50‑1 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  1:439490/1‑49 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:638059/1‑49 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCa                      <  2:5409151/50‑1 (MQ=255)

                        cgcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCa                      <  1:302159/50‑1 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:5369918/1‑48 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  1:1954043/1‑48 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCaa                     <  2:413830/50‑1 (MQ=255)

                         gcgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCaa                     <  2:191241/50‑1 (MQ=255)

                          cgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGc                       >  2:5767509/1‑47 (MQ=255)

                          cgGCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    <  2:1950376/50‑1 (MQ=255)

                           ggCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAg                    >  2:3340881/1‑49 (MQ=255)

                            gCTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGaa                  <  1:3071720/50‑1 (MQ=255)

                             cTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGaaa                 >  2:3989746/1‑50 (MQ=255)

                             cTTCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGaaa                 >  2:3528767/1‑50 (MQ=255)

                              ttCAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                >  2:2995804/1‑50 (MQ=255)

                                cAATATGGGCGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                <  2:2358070/48‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATATCGGTGAGTTTTCCGCGCAAGAAAtt               <  2:425203/49‑1 (MQ=38)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               <  2:792741/49‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAtt               <  1:5354608/49‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                <  1:2411711/48‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAAt                <  1:656919/48‑1 (MQ=255)

                                cAATATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              >  1:1413074/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcg             >  2:22944/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcg             >  2:5094350/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcg             >  2:4410434/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcg             >  2:1517464/1‑50 (MQ=255)

                                 aaTATGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTc              <  1:5607161/49‑1 (MQ=255)

                                  atatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgc            >  2:4212542/1‑50 (MQ=255)

                                   tatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgcg           >  1:5347562/1‑50 (MQ=255)

                                   tatGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTcgcg           >  1:3040077/1‑50 (MQ=255)

                                    atGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          >  1:1026104/1‑50 (MQ=255)

                                    atGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          >  1:5494752/1‑50 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  2:3922445/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  2:376375/49‑1 (MQ=255)

                                     tGGACGACAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCgcgc          <  1:2098789/49‑1 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTa       <  1:43099/50‑1 (MQ=255)

                                       gacgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTa       >  1:4962857/1‑50 (MQ=255)

                                        acgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAt      <  1:2248013/50‑1 (MQ=255)

                                         cgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAtt     <  2:748055/50‑1 (MQ=255)

                                         cgacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAtt     <  2:5359245/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  2:1264460/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    <  2:4671019/50‑1 (MQ=255)

                                          gacAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTAttt    >  1:5459925/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   <  2:1724557/50‑1 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   >  2:1993548/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   >  2:1730460/1‑50 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   <  2:5699281/50‑1 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   <  1:1879220/50‑1 (MQ=255)

                                           acAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTg   <  1:3886386/50‑1 (MQ=255)

                                            cAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGc  <  1:2684871/50‑1 (MQ=255)

                                            cAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGc  <  2:3905070/50‑1 (MQ=255)

                                            cAGTCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGc  <  1:3618174/50‑1 (MQ=255)

TTGCGAGTGAACTATTATCTCGAGCGCGGCTTCAATATGGACGACAGCCGCAATAACGGTGAGTTTTCCACGCAAGAAATTCGCGCCTATTTGC  >  NC_000913/1382508‑1382601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`