| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,562,085 | C→T | A133T (GCA→ACA) | ddpA ← | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,562,085 | 0 | C | T | 86.2% | 539.1 / 72.0 | 189 | A133T (GCA→ACA) | ddpA | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (10/16); new base T (80/83); total (90/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.60e-01 | |||||||||||
Only 100 of 194 total aligned reads displayed.
CACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGTTT > NC_000913/1562038‑1562133 | cACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGttt > 1:2683932/1‑50 (MQ=255) aCCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGttt < 2:3428400/49‑1 (MQ=255) aCCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTc > 2:1482075/1‑50 (MQ=255) aCCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTc > 2:287268/1‑50 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTct > 2:3243375/1‑50 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTct < 2:136360/50‑1 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTct > 2:4927377/1‑50 (MQ=255) ccGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTct < 1:4435797/50‑1 (MQ=255) cGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctg < 1:5228820/50‑1 (MQ=255) cGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctg < 2:2257050/50‑1 (MQ=255) gTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgc > 1:1051876/1‑50 (MQ=255) gTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTctgc > 1:3829998/1‑50 (MQ=255) tATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgct < 2:2585998/50‑1 (MQ=255) tATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgct > 1:4161514/1‑50 (MQ=255) tATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgct < 2:4022194/50‑1 (MQ=255) aTGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgctg > 1:126079/1‑50 (MQ=255) tGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTctgctg < 2:4613452/49‑1 (MQ=255) tGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTgg < 1:3016152/50‑1 (MQ=255) gTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGc > 1:4947993/1‑50 (MQ=255) gTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGc > 1:1087931/1‑50 (MQ=255) ttCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGcc < 2:2439158/50‑1 (MQ=255) cgtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGcccc > 2:1282110/1‑50 (MQ=255) gtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCt > 1:881214/1‑50 (MQ=255) gtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCt > 2:4344835/1‑50 (MQ=255) gtcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCt < 1:5359785/50‑1 (MQ=255) tcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTg < 2:1142478/50‑1 (MQ=255) tcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTg < 2:1900045/50‑1 (MQ=255) tcgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTg < 1:5034499/50‑1 (MQ=255) cgGGAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTgg > 2:5608784/1‑50 (MQ=255) gggAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGc < 2:2368248/50‑1 (MQ=255) gggAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGc > 2:5333815/1‑50 (MQ=255) ggAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGcc < 2:2423127/50‑1 (MQ=255) ggAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGcc < 2:3074030/50‑1 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCg < 1:2615817/50‑1 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCg < 2:5155268/50‑1 (MQ=255) gAGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCg < 2:671710/50‑1 (MQ=255) aGCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGa < 2:3623927/50‑1 (MQ=255) gCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAt > 1:1187588/1‑50 (MQ=255) gCATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAt > 2:42659/1‑50 (MQ=255) cATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtt > 2:2709586/1‑50 (MQ=255) cATCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtt < 1:371644/50‑1 (MQ=255) cATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGAtt < 2:1626874/50‑1 (MQ=255) aTCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAttt < 2:5233259/50‑1 (MQ=255) aTCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAttt > 2:875931/1‑50 (MQ=255) tCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtttt > 2:57527/1‑50 (MQ=255) tCAATCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtttt < 2:4759742/50‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAttttt < 2:1986667/49‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGAtttt > 2:1594816/1‑48 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTta < 1:2078674/50‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTta < 1:2759868/50‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTta < 1:3464214/50‑1 (MQ=255) aaTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTta < 2:2738774/50‑1 (MQ=255) aTCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtag > 2:1336073/1‑50 (MQ=255) tCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtag > 1:3386220/1‑49 (MQ=255) tCTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtag > 2:3229845/1‑49 (MQ=255) cTTTAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtag > 1:3569649/1‑48 (MQ=255) cTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtag > 1:5521128/1‑48 (MQ=255) tttAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag > 1:1331159/1‑50 (MQ=255) tttAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag > 1:2282094/1‑50 (MQ=255) tttAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag > 1:3142987/1‑50 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag < 2:439900/48‑1 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagtag < 1:509745/48‑1 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagta < 2:2803448/47‑1 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagta < 2:3667295/47‑1 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTtagt < 1:619856/46‑1 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGcc > 1:2703732/1‑50 (MQ=255) tAAATCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGc < 2:2833835/49‑1 (MQ=255) tAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTtagta < 1:3109145/47‑1 (MQ=255) aaaTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGcc < 2:4816498/49‑1 (MQ=255) aaaTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCg > 2:1822249/1‑50 (MQ=255) aaaTCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCg > 1:5104379/1‑50 (MQ=255) aaTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCg < 1:4996694/49‑1 (MQ=255) aaTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGc > 1:1534717/1‑50 (MQ=255) aTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt > 2:3851613/1‑50 (MQ=255) aTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt > 2:3304206/1‑50 (MQ=255) aTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt < 2:2024256/50‑1 (MQ=255) aTCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt > 1:4670756/1‑50 (MQ=255) tCTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCt > 2:5401772/1‑49 (MQ=255) cTTTGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTc > 2:5098656/1‑49 (MQ=255) ttGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaa < 1:796476/50‑1 (MQ=255) ttGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaa > 2:1552182/1‑49 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTc < 2:120347/46‑1 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaa > 1:871229/1‑48 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCa < 2:4703174/47‑1 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCa < 1:1975421/47‑1 (MQ=255) tGGGAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCa < 2:2135922/47‑1 (MQ=255) gggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaaa < 1:4053817/49‑1 (MQ=255) gggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaaa < 2:2535398/49‑1 (MQ=255) gggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaaa < 2:2164041/49‑1 (MQ=255) gggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaaa < 2:1465327/49‑1 (MQ=255) gggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaaaa < 1:4835050/49‑1 (MQ=255) gggAAATGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCaa > 1:3415599/1‑47 (MQ=255) gAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaa < 2:2946004/50‑1 (MQ=255) gAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaaga > 1:3285535/1‑49 (MQ=255) aaaTGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaa < 1:3190105/50‑1 (MQ=255) aaTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaag > 1:3064307/1‑50 (MQ=255) aaTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaag < 1:4540429/50‑1 (MQ=255) aaTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAaaagaaag > 2:1935058/1‑50 (MQ=255) aTGTTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGt > 2:4581789/1‑50 (MQ=255) cTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGttt < 2:3571153/49‑1 (MQ=255) | CACCGTATGTTCGTCGGGAGCATCAATCTTTAAATCTTTGGGAAATGCTTCTGCTGGCCCCTGGCCGATTTTTAGTAGCCGCTCAAAAGAAAGTTT > NC_000913/1562038‑1562133 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |