| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,697,216 | T→C | intergenic (‑164/+57) | uidR ← / ← hdhA | DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,697,216 | 0 | T | C | 88.6% | 492.6 / 40.7 | 158 | intergenic (‑164/+57) | uidR/hdhA | DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (10/8); new base C (83/57); total (93/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 162 total aligned reads displayed.
TGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTCCGT > NC_000913/1697168‑1697265 | tGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGtt > 2:3660452/1‑50 (MQ=255)tGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGtt > 1:3217377/1‑50 (MQ=255) gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtga > 2:2321044/1‑50 (MQ=255) gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtga > 1:424107/1‑50 (MQ=255) gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtg < 1:3367232/49‑1 (MQ=255) tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 2:4968015/1‑49 (MQ=255) tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 1:5764745/1‑49 (MQ=255) aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 1:2618114/1‑48 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAg > 1:3617985/1‑50 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatga < 1:4541990/49‑1 (MQ=255) ccAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGt > 1:5724723/1‑50 (MQ=255) ccAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGt > 1:5600979/1‑50 (MQ=255) ccAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGt > 2:1862814/1‑50 (MQ=255) cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGtt > 2:5523979/1‑50 (MQ=255) cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt > 2:2948818/1‑50 (MQ=255) cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt < 2:827829/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:3971811/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:1287882/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt > 1:1989000/1‑49 (MQ=255) aTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTa > 2:5220020/1‑50 (MQ=255) tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTAt < 1:350474/50‑1 (MQ=255) tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt > 2:4627854/1‑50 (MQ=255) tAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTAt > 2:4384076/1‑50 (MQ=255) aGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc > 1:4713734/1‑50 (MQ=255) aGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc > 1:2325321/1‑50 (MQ=255) aGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc > 1:5239342/1‑50 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATcc < 2:5218232/50‑1 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATcc < 2:3475442/50‑1 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATcc < 1:1065670/50‑1 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc < 2:3652537/49‑1 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc < 2:2533981/50‑1 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg > 1:5802497/1‑50 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg < 2:3165417/50‑1 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg < 2:4956980/50‑1 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg < 1:4687530/50‑1 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg > 1:4828953/1‑50 (MQ=255) gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg > 2:2483448/1‑50 (MQ=255) gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg > 1:438586/1‑50 (MQ=255) gTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCgg > 1:2203530/1‑50 (MQ=255) tGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCgg > 2:1343545/1‑49 (MQ=255) tGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt < 2:4753328/50‑1 (MQ=255) aTTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTaa < 1:4098755/50‑1 (MQ=255) aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaa > 2:5089948/1‑50 (MQ=255) tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa > 1:2113875/1‑50 (MQ=255) tttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa < 1:34007/50‑1 (MQ=255) ttGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTaaa > 1:1722648/1‑49 (MQ=255) tGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAaac < 2:1433347/49‑1 (MQ=255) ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa > 2:1965511/1‑50 (MQ=255) ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaaca < 2:3252615/49‑1 (MQ=255) ggCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaaca < 2:4879710/49‑1 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaac < 1:2578742/50‑1 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaac < 1:1347082/50‑1 (MQ=255) cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca > 2:678438/1‑50 (MQ=255) tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac > 2:905317/1‑50 (MQ=255) tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac > 2:368139/1‑50 (MQ=255) tGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac > 1:1182819/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAAcacg > 1:3438682/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAAcacg > 2:2198332/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:2937317/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:723870/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:5353170/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:5616159/1‑50 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac < 1:701547/48‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgc < 1:4283385/50‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg < 2:2705505/49‑1 (MQ=255) aGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAAcacgcac < 2:3780067/50‑1 (MQ=255) aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac < 2:102269/50‑1 (MQ=255) aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac > 1:2226587/1‑50 (MQ=255) aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac > 2:4925651/1‑50 (MQ=255) aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac < 1:31973/50‑1 (MQ=255) aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac > 2:4172116/1‑50 (MQ=255) aGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcac < 2:2639919/50‑1 (MQ=255) gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg < 1:595198/50‑1 (MQ=255) gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg < 1:2646809/50‑1 (MQ=255) aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgt < 2:5471819/49‑1 (MQ=255) tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt < 2:3077720/49‑1 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt > 1:4324781/1‑50 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt > 1:846382/1‑50 (MQ=255) aGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt > 2:3246197/1‑49 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt < 2:2060857/49‑1 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt < 2:4730830/49‑1 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGttt < 2:571907/49‑1 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa < 1:3870032/50‑1 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa > 1:2299803/1‑50 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa < 2:2808208/50‑1 (MQ=255) cAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc > 1:2591116/1‑50 (MQ=255) cAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc > 1:939979/1‑50 (MQ=255) cAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc > 2:1222015/1‑50 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc < 2:1758488/50‑1 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc > 1:1618483/1‑50 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc < 1:175989/50‑1 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc < 2:1622809/50‑1 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc > 2:4127977/1‑50 (MQ=255) gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg > 1:947577/1‑50 (MQ=255) gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg < 1:4462588/50‑1 (MQ=255) agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg < 1:1776263/50‑1 (MQ=255) gaCGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt < 1:888168/50‑1 (MQ=255) aCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTc < 1:2746826/50‑1 (MQ=255) aCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTc > 2:4802181/1‑50 (MQ=255) ttGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTCCGt > 1:1047624/1‑50 (MQ=255) | TGGTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTCCGT > NC_000913/1697168‑1697265 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |