| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,811,208 | T→C | V92A (GTT→GCT) | tcyP → | cystine/sulfocysteine:cation symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,811,208 | 0 | T | C | 98.5% | 759.2 / 0.8 | 197 | V92A (GTT→GCT) | tcyP | cystine/sulfocysteine:cation symporter |
| Reads supporting (aligned to +/- strand): ref base T (0/3); new base C (103/91); total (103/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-01 | |||||||||||
Only 100 of 199 total aligned reads displayed.
CTGCAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTGAC > NC_000913/1811159‑1811256 | gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTg > 2:4233750/1‑50 (MQ=255) gcAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTg > 1:1670373/1‑50 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc < 2:1743250/50‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc > 1:4237810/1‑50 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc < 1:2666412/50‑1 (MQ=255) cAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGc > 2:5815084/1‑50 (MQ=255) aaaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGcc > 1:97274/1‑50 (MQ=255) aaTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGccc < 2:1514059/50‑1 (MQ=255) aTGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCg < 2:4928355/50‑1 (MQ=255) tGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGt > 2:714827/1‑50 (MQ=255) gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc > 1:2929076/1‑50 (MQ=255) gATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTc > 2:182896/1‑50 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt > 1:5265545/1‑50 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt < 2:108452/50‑1 (MQ=255) aTCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCt < 2:4044515/50‑1 (MQ=255) tCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTg < 2:3715903/50‑1 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 2:171956/1‑49 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCa > 1:3426566/1‑49 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt < 2:3200717/50‑1 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt < 1:5078961/50‑1 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt < 2:402503/50‑1 (MQ=255) ttATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCAt < 2:1421838/50‑1 (MQ=255) aTGCCGTTTGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 2:3293324/1‑50 (MQ=39) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 1:3133867/1‑50 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 1:374601/1‑50 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 1:5192139/1‑50 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 1:2316003/1‑50 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa > 2:5099646/1‑50 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATa < 1:1246059/49‑1 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATa < 1:4851177/49‑1 (MQ=255) aTGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATa < 1:3285304/49‑1 (MQ=255) tGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATaa < 1:3193780/49‑1 (MQ=255) gCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg > 2:3813024/1‑50 (MQ=255) ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACg > 2:5357268/1‑49 (MQ=255) ccGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGc < 1:2697251/50‑1 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa > 2:4190085/1‑50 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa < 2:2231486/50‑1 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa > 1:2232949/1‑50 (MQ=255) cGTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCa > 2:2775182/1‑50 (MQ=255) gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAt > 2:5240137/1‑50 (MQ=255) gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAt < 2:2318144/50‑1 (MQ=255) gTTAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAt > 2:2481027/1‑50 (MQ=255) ttAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtc > 2:5273469/1‑50 (MQ=255) tAGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct > 1:2205724/1‑50 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct < 2:3257988/49‑1 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct > 2:2541694/1‑49 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct < 1:3753815/49‑1 (MQ=255) aGTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct < 2:814410/49‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCAtct > 1:3347493/1‑48 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCa < 1:5512918/50‑1 (MQ=255) gTCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCa < 1:1205496/50‑1 (MQ=255) tCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAg < 1:5845614/50‑1 (MQ=255) tCTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAg > 1:4476229/1‑50 (MQ=255) cTTCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 1:394897/1‑50 (MQ=255) ttCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 2:4740245/1‑49 (MQ=255) ttCGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt > 2:594881/1‑49 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGtt < 1:4583910/48‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGtt < 1:726010/48‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 1:4943102/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGt < 2:3021745/47‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTa < 1:4376490/49‑1 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg > 2:5452345/1‑50 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg > 1:1992470/1‑50 (MQ=255) cGCCTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAg > 1:4882340/1‑50 (MQ=255) ccTCTATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAgg > 1:3779352/1‑49 (MQ=255) ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGc > 1:604993/1‑49 (MQ=255) ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGc > 1:3457265/1‑49 (MQ=255) ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGc > 2:5323362/1‑49 (MQ=255) ctctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCa < 2:4821635/50‑1 (MQ=255) ctATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaa > 2:2267107/1‑49 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa > 1:67531/1‑50 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa > 1:149013/1‑50 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaa < 2:5638529/48‑1 (MQ=255) tATTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaa < 2:1295927/48‑1 (MQ=255) aTTCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt > 1:1931656/1‑50 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa < 1:649305/48‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa < 1:3100101/48‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaaa < 2:1768417/48‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCaaa < 1:3826186/47‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt < 1:4773710/49‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt > 1:2773858/1‑49 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAAt < 1:1302846/49‑1 (MQ=255) ttCTGAGCGCGGCTGCCCGTCTGCATAACGCAGCTCAGTTAGGCAAAATc < 2:1535262/50‑1 (MQ=255) cTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCa < 2:5826713/49‑1 (MQ=255) cTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCa < 2:4637206/49‑1 (MQ=255) cTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCa < 1:2852020/49‑1 (MQ=255) cTGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCa < 1:26027/49‑1 (MQ=255) tGAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGt > 2:351659/1‑50 (MQ=255) gAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtt > 1:2102959/1‑50 (MQ=255) gAGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtt > 2:833379/1‑50 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGttt > 1:2447963/1‑50 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGttt < 2:1928885/50‑1 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGttt < 2:653432/50‑1 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGttt < 1:5201792/50‑1 (MQ=255) aGCGCGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtt < 2:20507/49‑1 (MQ=255) gcgcGGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGtttt < 1:5655286/50‑1 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt < 2:3610467/50‑1 (MQ=255) gcgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 1:4099601/1‑50 (MQ=255) cgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCt > 2:5489401/1‑49 (MQ=255) cgGCTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTg < 2:2579532/50‑1 (MQ=255) | CTGCAAATGATCGTTATGCCGTTAGTCTTCGCCTCTATTCTGAGCGCGGTTGCCCGTCTGCATAACGCATCTCAGTTAGGCAAAATCAGTTTTCTGAC > NC_000913/1811159‑1811256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |