Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,090,282 C→T intergenic (+30/‑65) yggI → / → endA conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,090,2820CT100.0% 581.3 / NA 142intergenic (+30/‑65)yggI/endAconserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (74/68);  total (74/68)

Only 100 of 142 total aligned reads displayed.

CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328
                                               |                                              
cAGCTGGTTGCGAAATAACCATCTGAACTTTCAGGAACTTTCCTGATTTg                                              <  1:5352634/50‑1 (MQ=38)
cAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTg                                              <  1:3637073/50‑1 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            >  1:2142969/1‑50 (MQ=255)
  gCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGc                                            <  1:692282/50‑1 (MQ=255)
   cTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  2:4981635/1‑50 (MQ=255)
    tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  2:4742129/1‑49 (MQ=255)
    tGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCt                                           >  2:2112374/1‑49 (MQ=255)
     ggTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGa                                         >  1:1218303/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  1:3180954/50‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        >  2:3407223/1‑50 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  2:326421/50‑1 (MQ=255)
      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAt                                        <  2:2689938/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                       <  1:3305209/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                       <  1:1808667/50‑1 (MQ=255)
       ttGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                       <  2:4322537/50‑1 (MQ=255)
       ttGCGAAATAACCATCCGAACTATCAGGAACTTTCCTGATTTGGCTGAtt                                       >  2:289996/1‑50 (MQ=255)
        tGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:3596992/1‑50 (MQ=255)
        tGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      >  1:676031/1‑50 (MQ=255)
         gCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTg                                      <  1:4076356/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  1:4499541/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGc                                     <  2:5841819/49‑1 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  2:18879/1‑50 (MQ=255)
          cGAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  1:1142171/1‑50 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  2:5665150/1‑49 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCa                                    >  2:5466064/1‑49 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  1:4045587/50‑1 (MQ=255)
           gAAATAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCAt                                   <  2:4233283/50‑1 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  2:3496884/1‑50 (MQ=255)
            aaaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATa                                  >  1:5113124/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  2:4093268/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  2:1646182/1‑50 (MQ=255)
             aaTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 <  2:4320406/50‑1 (MQ=255)
              aTAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAc                                 >  2:4372129/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  2:2684775/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATAcc                                >  2:4408210/1‑49 (MQ=255)
               tAACCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCa                               <  2:2307076/50‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa                             <  2:3826034/50‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaa                             <  1:4563317/50‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              <  1:1974010/49‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              <  1:32034/49‑1 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              >  1:3826592/1‑49 (MQ=255)
                 aCCATCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaa                              <  2:5685307/49‑1 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  2:2677258/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:888074/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  1:1028359/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCaaaa                            >  2:1089299/1‑48 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa                          <  2:2878396/50‑1 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa                          <  2:531998/50‑1 (MQ=255)
                    aTCTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACa                          <  2:5257917/50‑1 (MQ=255)
                      cTGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        >  2:4780830/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       >  1:1357780/1‑50 (MQ=255)
                       tGAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCt                       >  2:3044246/1‑50 (MQ=255)
                        gAACTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      >  2:372183/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  2:1816796/46‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  1:552900/46‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAg                         <  2:3387759/46‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGc                        <  1:2111862/47‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     >  2:1562000/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     >  2:1045260/1‑50 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCttt                     <  2:2007486/50‑1 (MQ=255)
                         aaCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCtt                      <  1:4495431/49‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  1:3857248/50‑1 (MQ=255)
                          aCTATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTc                    <  2:5108197/50‑1 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:4001949/1‑50 (MQ=255)
                            tATCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  2:269704/1‑50 (MQ=255)
                             aTCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGc                  >  1:4929011/1‑49 (MQ=255)
                              tCAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTa                <  1:1448018/50‑1 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  2:5008247/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  1:1626689/1‑50 (MQ=255)
                               cAGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               >  2:3240129/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  2:1820174/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  2:3520246/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTAc               <  2:2585138/49‑1 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  2:2751768/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  2:5755748/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  1:5377827/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  1:5785145/1‑50 (MQ=255)
                                aGGAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACg              >  2:2003941/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            >  2:2921014/1‑50 (MQ=255)
                                  gAACTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGtt            <  2:1669581/50‑1 (MQ=255)
                                   aaCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTg           <  1:2302114/50‑1 (MQ=255)
                                    aCTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGc          >  2:2325277/1‑50 (MQ=255)
                                     cTTTCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCt         <  2:469707/50‑1 (MQ=255)
                                      tttCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        >  1:4570823/1‑50 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        <  1:2112079/48‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTg        <  2:2090898/48‑1 (MQ=255)
                                        tCCTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      >  2:2100632/1‑50 (MQ=255)
                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      <  1:1748560/49‑1 (MQ=255)
                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGc      <  2:2594380/49‑1 (MQ=255)
                                         ccTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt     >  2:5172700/1‑50 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCt     <  1:5312111/49‑1 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:4175837/50‑1 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    >  1:4032015/1‑50 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  1:4549271/50‑1 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    >  1:1957603/1‑50 (MQ=255)
                                          cTGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTc    <  2:1504275/50‑1 (MQ=255)
                                           tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg   >  2:3454920/1‑50 (MQ=255)
                                           tGATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCg   >  1:1504240/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:260953/1‑50 (MQ=255)
                                            gATTTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGt  >  1:1388015/1‑50 (MQ=255)
                                               |                                              
CAGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGT  >  NC_000913/3090235‑3090328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑