| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,816,579 | G→A | intergenic (‑30/‑97) | rph ← / → yicC | truncated RNase PH/UPF0701 family protein YicC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,816,579 | 0 | G | A | 93.4% | 684.1 / 24.2 | 199 | intergenic (‑30/‑97) | rph/yicC | truncated RNase PH/UPF0701 family protein YicC |
| Reads supporting (aligned to +/- strand): ref base G (3/10); new base A (97/87); total (101/98) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.67e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
Only 100 of 201 total aligned reads displayed.
CTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGC > NC_000913/3816530‑3816626 | cTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTgg > 2:5227903/1‑50 (MQ=255)cTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTgg < 2:1534343/50‑1 (MQ=255) aCGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACt > 2:2824777/1‑50 (MQ=255) cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGc < 2:516273/48‑1 (MQ=255) cGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTg > 2:5103216/1‑50 (MQ=255) ggCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgc > 1:1894419/1‑50 (MQ=255) gCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg < 1:1324721/50‑1 (MQ=255) ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcgc < 1:5296033/50‑1 (MQ=255) ccTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTgcg > 2:1922368/1‑49 (MQ=255) tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 2:4211408/1‑50 (MQ=255) tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 2:1151312/1‑50 (MQ=255) tgctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAt > 1:4040325/1‑50 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCAtt < 2:1179413/49‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:2195197/49‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 2:4882676/49‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:4533369/49‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCAtt < 1:362337/49‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 2:3249700/50‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 1:2720057/50‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta < 2:1234235/50‑1 (MQ=255) ctgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:5357043/1‑50 (MQ=255) tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:1367579/1‑49 (MQ=255) tgGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATta > 1:322172/1‑49 (MQ=255) ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata > 2:3210783/1‑50 (MQ=255) ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata > 1:1143485/1‑50 (MQ=255) ggACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata > 1:1572513/1‑50 (MQ=255) gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:3761031/49‑1 (MQ=255) gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATtata < 1:3545370/49‑1 (MQ=255) gACGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATAc > 2:4967230/1‑50 (MQ=255) aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 2:2338173/50‑1 (MQ=255) aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 2:4303730/1‑50 (MQ=255) aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg < 1:5135135/50‑1 (MQ=255) aCGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 1:2011349/1‑50 (MQ=255) cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACgg < 2:500640/50‑1 (MQ=255) cGCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACg > 2:549851/1‑49 (MQ=255) gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa < 2:5660020/50‑1 (MQ=255) gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa < 2:3392279/50‑1 (MQ=255) gCATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGa > 1:5451726/1‑50 (MQ=255) cATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGAc < 2:697466/50‑1 (MQ=255) cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 2:2833359/50‑1 (MQ=255) cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc < 2:2556079/50‑1 (MQ=255) cATATTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGAc > 2:1723255/1‑50 (MQ=255) atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 2:3414107/1‑50 (MQ=255) atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 2:8663/50‑1 (MQ=255) atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 1:2867030/50‑1 (MQ=255) atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt < 1:2980811/50‑1 (MQ=255) atatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACt > 1:85468/1‑50 (MQ=255) tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACtt > 1:1936174/1‑50 (MQ=255) tatTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTAGACGGACtt < 2:3586008/50‑1 (MQ=255) atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc > 2:2608826/1‑50 (MQ=255) atTGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc > 2:2506945/1‑50 (MQ=255) ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc < 2:1008842/50‑1 (MQ=255) ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTcc > 1:735844/1‑50 (MQ=255) ttGAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTc < 1:625376/49‑1 (MQ=255) gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg > 2:4500653/1‑50 (MQ=255) gAAATCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg > 1:1692123/1‑50 (MQ=255) aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc < 1:941428/50‑1 (MQ=255) aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc > 2:5411520/1‑50 (MQ=255) aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggc < 1:1843514/50‑1 (MQ=255) aaaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcgg < 2:2163855/49‑1 (MQ=255) aaTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcg < 1:3920155/50‑1 (MQ=255) aTCTCCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCcggcgg > 2:1825098/1‑50 (MQ=255) ctcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGt > 2:3455353/1‑49 (MQ=255) ctcCGGCTTGAAACAAATGTGACTGCGCATTAGACGGACTTCCGGCGGt > 2:1805246/1‑49 (MQ=255) tcCGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTa > 1:2189883/1‑50 (MQ=255) ccGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt > 2:3838101/1‑50 (MQ=255) cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGtt < 1:4489947/47‑1 (MQ=255) cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGtt < 2:3715533/47‑1 (MQ=255) cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAtt < 2:4382077/50‑1 (MQ=255) cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTAt < 1:2593300/49‑1 (MQ=255) cGGCTTGAAACAAATGTGACTGCGCATTATACGGACTACCGGCGGtt < 2:3822034/47‑1 (MQ=255) ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:3838052/1‑50 (MQ=255) ggCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTc > 1:459122/1‑50 (MQ=255) gCTTGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTcc < 1:4958956/50‑1 (MQ=255) tGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt > 2:3498009/1‑50 (MQ=255) tGAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTAt > 2:3107766/1‑50 (MQ=255) gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTaa > 2:1912863/1‑48 (MQ=255) gAAACAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATc > 1:433617/1‑50 (MQ=255) aaaCAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 2:4740827/1‑50 (MQ=255) aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 1:3386579/1‑50 (MQ=255) aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc < 2:5386768/50‑1 (MQ=255) aaaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATcc > 2:528258/1‑50 (MQ=255) aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt < 2:2986643/50‑1 (MQ=255) aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 2:2910641/1‑50 (MQ=255) aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 2:2060636/1‑50 (MQ=255) aaCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCt > 1:1058901/1‑50 (MQ=255) aCAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTg < 2:1280069/50‑1 (MQ=255) cAAATGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:2908919/1‑50 (MQ=255) aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:3350746/1‑49 (MQ=255) aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGa > 1:5646752/1‑49 (MQ=255) aaaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc < 2:5812268/50‑1 (MQ=255) aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:5783754/1‑49 (MQ=255) aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:3534579/1‑49 (MQ=255) aaTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACa < 2:5260716/50‑1 (MQ=255) aTGTGACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGAc > 1:552467/1‑48 (MQ=255) tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg > 1:4676546/1‑50 (MQ=255) tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg > 2:2878647/1‑50 (MQ=255) tgtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAg < 1:3110688/50‑1 (MQ=255) gtgACTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAgg > 1:4841409/1‑50 (MQ=255) tgGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGc < 1:787104/50‑1 (MQ=255) | CTACGGCCTGCTGGACGCATATTGAAATCTCCGGCTTGAAACAAATGTGGCTGCGCATTATACGGACTTCCGGCGGTTATTCCTATCCTGACAAGGC > NC_000913/3816530‑3816626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |