| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 80 [0] | [0] 81 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 80 (0.850) | 56/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT > 1:1368467/1‑50TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGT < 1:1583053/50‑1 GTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT > 1:5982220/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:2705968/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:4637509/50‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:1405159/49‑1 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:4672483/49‑1 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:6950187/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:2252304/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:358330/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:2796417/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:2132222/50‑1 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC < 1:5680347/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:1508411/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC < 1:6046603/50‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:6081710/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1732149/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:2126091/1‑50 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCA < 1:6865363/49‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:4631885/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:2140768/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:5640427/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:4511500/1‑50 GGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:1569743/1‑50 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC < 1:4960415/50‑1 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGT > 1:1060545/1‑49 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:2624366/50‑1 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:4814178/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:1952474/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA > 1:1439169/1‑50 ATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAA < 1:4182633/50‑1 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT < 1:5691577/50‑1 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:3906782/1‑50 TCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC < 1:3563450/49‑1 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:5191282/1‑50 CATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC > 1:6160939/1‑50 ATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTT > 1:867889/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT > 1:5283079/1‑50 TACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTG < 1:6345846/49‑1 ACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT > 1:4697034/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC < 1:1483810/50‑1 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTC > 1:2026639/1‑50 CGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGT < 1:6010536/49‑1 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:4787465/1‑50 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:1430683/1‑49 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:337668/1‑49 GAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAA < 1:703665/50‑1 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:6051389/1‑50 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC < 1:3921109/50‑1 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT > 1:165457/1‑50 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > 1:2770523/1‑50 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:3440451/50‑1 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:401601/1‑50 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:5138836/1‑49 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:636223/1‑49 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:5140406/1‑49 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:1330316/1‑49 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:4206748/1‑50 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:4127444/50‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:5677795/50‑1 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCAC < 1:816407/50‑1 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:2838111/1‑50 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:5557913/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:4368977/50‑1 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:6197800/1‑49 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:7081436/1‑49 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATA < 1:1217393/50‑1 TGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATA < 1:2275234/50‑1 GATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 1:5270781/1‑50 ATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA < 1:5651608/49‑1 AACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC > 1:1464111/1‑50 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATGCG < 1:3514538/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACG < 1:2833402/50‑1 ACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAC < 1:4025641/49‑1 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC < 1:5955719/50‑1 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGC > 1:1099492/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC < 1:5398382/50‑1 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:6706147/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:539372/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:1056859/1‑50 TGTCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997819‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |