| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 129 [0] | [0] 127 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 95 (1.340) +CAGATAATTCAA |
50/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 144 total aligned reads displayed.
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| AGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCA < 1:1004499/49‑1 AGAGTCTCACCTCCTGATTTTAGTAATCGCTTGATGCTAAGAACTATCA < 1:194975/49‑1 AGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGA > 1:514077/1‑49 GTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGAT > 1:2304374/1‑49 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA < 1:6660828/50‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:3459737/1‑50 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:5946564/1‑50 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:1676158/1‑50 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:2101961/1‑50 CTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAAT > 1:4161465/1‑50 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:6121408/1‑49 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2183036/1‑49 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:6952991/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA < 1:6963155/50‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:6512325/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:3716565/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT < 1:1726770/48‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAA < 1:4692966/50‑1 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:4124090/1‑48 CTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCA > 1:5021564/1‑48 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG < 1:2617161/50‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:7063870/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:272192/49‑1 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGC < 1:1057106/49‑1 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT > 1:911093/1‑50 TGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGT > 1:3382322/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG < 1:2824767/50‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGG > 1:2326652/1‑50 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:2117064/49‑1 ATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTG < 1:335557/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG > 1:6785302/1‑50 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:1013853/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:3204565/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:700651/49‑1 TTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT < 1:2826383/49‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTG < 1:5196218/49‑1 TAGTAATCTCTTGATGCTAAGAACTATCAGAGAATTCAAAGCGTGGCTG < 1:605810/49‑1 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT < 1:4322471/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:6948483/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:5012279/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:3624990/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:397769/1‑50 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:4837826/1‑50 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:6397894/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:5806312/49‑1 CTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA > 1:6350234/1‑48 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:5268754/1‑50 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:5529380/1‑50 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:726996/1‑50 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:448240/48‑1 GATGCTAAGAACTGTCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:2844066/48‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAA < 1:2450321/49‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGA < 1:1524935/48‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:3137271/47‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:6406702/47‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:4029290/50‑1 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA < 1:426566/50‑1 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:3762553/1‑50 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:6694560/1‑50 CTAAGAACTATCAGTTAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:4972367/49‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:4796407/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:6984219/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG < 1:611221/50‑1 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:3420214/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:1671332/49‑1 TAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGT > 1:5988937/1‑50 AAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT > 1:2804100/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:4842600/50‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT > 1:2542344/1‑50 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:5209942/49‑1 AGAACTATCAGATAAATCAAAGCGTGGCTGTGATGATAGGAATTATGT < 1:5538618/48‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:7051480/50‑1 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:5233772/1‑50 AACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT < 1:3000602/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:4541131/50‑1 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA < 1:1502661/50‑1 TATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC > 1:1320643/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:5657782/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:3384765/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:3134086/48‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGA < 1:4281493/50‑1 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG > 1:1253438/1‑49 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA < 1:3855110/50‑1 GATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAA > 1:6406647/1‑50 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:300363/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:5137449/50‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:4913425/50‑1 TAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATG < 1:2881316/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:3167827/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:2177995/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:2396340/50‑1 ATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAG < 1:5200360/50‑1 TCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:745407/1‑50 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATA < 1:3887507/50‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT > 1:948318/1‑49 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:4848354/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:1808029/49‑1 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT > 1:2755574/1‑49 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:691811/1‑50 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA < 1:2660523/50‑1 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |