| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,400,325 | Δ81,931 bp | [abgT]–[azoR] | 87 genes [abgT], abgB, abgA, abgR, mcaS, smrA, dgcM, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzpR, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH‑5, lomR, stfR, tfaR, pinR, ynaE, ynaM, ttcC, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD‑2, insC‑2, ydbA, insI‑2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, [azoR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1400325 | 1482255 | 81931 | 85 [0] | [0] 84 | [abgT]–[azoR] | [abgT],abgB,abgA,abgR,mcaS,smrA,dgcM,zntB,fnrS,ynaL,dbpA,ttcA,intR,xisR,rcbA,ralA,ralR,recT,recE,racC,ydaE,kilR,sieB,ydaF,ydaG,racR,ydaS,ydaT,ydaU,ydaV,ydaW,rzpR,rzoR,trkG,ynaK,ydaY,ynaA,lomR,insH‑5,lomR,stfR,tfaR,pinR,ynaE,ynaM,ttcC,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD‑2,insC‑2,ydbA,insI‑2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,[azoR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1400324 | 0 (0.000) | 82 (0.870) | 53/98 | 0.0 | 100% | coding (1450/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| ? | NC_000913 | 1482256 = | 0 (0.000) | coding (605/606 nt) | azoR | FMN dependent NADH:quinone oxidoreductase | |||||
‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACT < 1:1475640/49‑1 CCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTA > 1:6594507/1‑50 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT < 1:5312403/50‑1 CTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTAT > 1:3248118/1‑50 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCA < 1:2742340/50‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCA < 1:6938186/50‑1 TCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:1803513/1‑48 CGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:5438842/1‑47 CGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATG > 1:5654519/1‑47 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA < 1:3490975/50‑1 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA < 1:2093472/50‑1 GGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAG < 1:507988/49‑1 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAA < 1:6548747/50‑1 GCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGA > 1:1421371/1‑49 CAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:3990263/1‑50 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:586186/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:4132759/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC < 1:3583096/50‑1 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:4817719/1‑49 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:795703/1‑49 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:6590300/1‑49 AGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAA > 1:6947452/1‑49 GACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAAC > 1:4318063/1‑49 ACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAA > 1:2749921/1‑50 CCGACAAGATACCTCGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT < 1:2161117/50‑1 CCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAAT > 1:5310739/1‑50 CGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATG < 1:4758414/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC < 1:1057455/50‑1 GACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGC > 1:6356289/1‑50 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCGGAAACAATGCT < 1:6073196/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:490171/50‑1 ACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCT < 1:2359251/50‑1 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG > 1:4901602/1‑50 CAAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTG < 1:4315358/50‑1 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT > 1:1367514/1‑50 AAGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGT > 1:4477953/1‑50 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC < 1:2721267/50‑1 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:1949612/1‑50 AGATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:5247248/1‑50 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:4281314/1‑49 GATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTC > 1:228403/1‑49 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 1:1608111/50‑1 ATACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGA < 1:1866248/50‑1 TACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGAT < 1:648666/50‑1 ACCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG > 1:494033/1‑50 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGG < 1:3907564/50‑1 CCACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATG < 1:6191521/49‑1 ACGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCT < 1:2217076/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:4633176/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:1230099/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:5561306/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:1281673/50‑1 CGCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTG < 1:2734868/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:4100573/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC < 1:3284841/50‑1 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:3367385/1‑50 GCCAGC‑ACATC‑GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGC > 1:6814503/1‑50 tcGCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTC < 1:2935993/48‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAG < 1:4305368/50‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:2305420/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCA < 1:6338355/49‑1 GCAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGT > 1:4228060/1‑47 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA < 1:1433131/50‑1 CAGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGA > 1:2444011/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC < 1:1485929/50‑1 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:2050971/1‑50 AGCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGAC > 1:3669353/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT > 1:5496420/1‑50 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:4891603/50‑1 GCCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACT < 1:3729406/50‑1 CCATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTG < 1:6440310/50‑1 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 1:5376132/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT < 1:2082879/50‑1 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT > 1:4919039/1‑50 CATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGT < 1:5021858/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG < 1:6235235/50‑1 ATACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTG > 1:1596989/1‑50 ACTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT > 1:1219369/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > 1:5201960/1‑50 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:3289008/49‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:1849685/49‑1 CTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCT < 1:7022626/49‑1 ‑CCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1400275‑1400324‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTT > NC_000913/1482256‑1482304 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |