Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,962,566 Δ16,764 bp flhE–insA‑5 17 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1962566 1979329 16764 112 [0] [0] 111 flhE–insA‑5 flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19625650 (0.000)109 (1.180) 61/96 0.0 100% intergenic (+105/+15) yecT/flhE protein YecT/flagellar protein
?NC_000913 1979330 = 0 (0.000)intergenic (‑115/‑423) insA‑5/uspC IS1 protein InsA/universal stress protein C

Only 100 of 112 total aligned reads displayed.

AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1962516‑1962565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979330‑1979378
                                                                                                   
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT                                                   >  1:1273906/1‑50
 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTC                                                  <  1:5251065/50‑1
 AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACGCGCGAGCGCGTC                                                  <  1:5096261/50‑1
  GACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCG                                                 <  1:318861/50‑1
   ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC                                                >  1:571603/1‑50
   ACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGC                                                <  1:5125372/50‑1
    CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT                                               <  1:3178325/50‑1
    CATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCT                                               <  1:3544006/50‑1
     ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA                                              >  1:3072398/1‑50
     ATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTA                                              >  1:2172579/1‑50
      TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC                                             <  1:4634390/50‑1
      TCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTAC                                             >  1:6104387/1‑50
       CGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG                                            >  1:2876304/1‑50
        GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGC                                           >  1:1255808/1‑50
        GAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACG                                            <  1:16032/49‑1
         AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT                                          <  1:3136729/50‑1
         AGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCT                                          <  1:5578191/50‑1
          GCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTA                                         <  1:1942084/50‑1
            CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG                                        >  1:6139614/1‑49
            CTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAG                                        >  1:126927/1‑49
             TTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGC                                       >  1:2457749/1‑49
               TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAA                                     <  1:1256840/49‑1
               TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAA                                     <  1:2334728/49‑1
               TTTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCA                                      <  1:5527498/48‑1
                TTCACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAG                                    <  1:2217996/49‑1
                  CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA                                  >  1:5005411/1‑49
                  CACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCA                                  >  1:2235696/1‑49
                   ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA                                <  1:161053/50‑1
                   ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA                                <  1:2841150/50‑1
                   ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA                                 <  1:1890783/49‑1
                   ACTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAA                                 <  1:5553945/49‑1
                    CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA                               <  1:258911/50‑1
                    CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAA                               <  1:1835388/50‑1
                    CTGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAA                                >  1:4890230/1‑49
                     TGAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              >  1:5141298/1‑50
                      GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT                             >  1:4077430/1‑50
                      GAGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAAT                             >  1:265074/1‑50
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATG                            <  1:6527090/50‑1
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              <  1:4141265/48‑1
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              <  1:1922239/48‑1
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              <  1:353264/48‑1
                       AGTTATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAA                              <  1:1045016/48‑1
                          TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:7016160/1‑50
                          TATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:6496202/1‑50
                           ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:5894672/1‑49
                           ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:3624579/1‑49
                           ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:1365267/1‑49
                           ATTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:4085889/1‑49
                           ATTAAACATACTCGCGAGCGCGGCGATACGCTAGCAAGCAAAAATGAAA                         <  1:739807/49‑1
                            TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAAC                        <  1:5126854/49‑1
                            TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAAC                        <  1:4121076/49‑1
                            TTAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAA                         >  1:6161218/1‑48
                             TAAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      >  1:5615305/1‑50
                              AAACATACTCGCGGGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      <  1:5674664/49‑1
                              AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      <  1:50214/49‑1
                              AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      <  1:3355080/49‑1
                              AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      >  1:5288654/1‑49
                              AAACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAG                      <  1:4521752/49‑1
                               AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA                    <  1:3036852/50‑1
                               AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA                    <  1:5863899/50‑1
                               AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA                    <  1:3802941/50‑1
                               AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGA                    <  1:432461/50‑1
                               AACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGG                     <  1:3492103/49‑1
                                ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   <  1:1200129/50‑1
                                ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   <  1:1371651/50‑1
                                ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   <  1:6956542/50‑1
                                ACATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   >  1:2000679/1‑50
                                 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   >  1:3588446/1‑49
                                 CATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAA                   >  1:3456332/1‑49
                                  ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATA                 <  1:634529/50‑1
                                  ATACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAAT                  >  1:4585375/1‑49
                                   TACTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAA                >  1:6389860/1‑50
                                     CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC              <  1:5048617/50‑1
                                     CTCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAAT               <  1:1197676/49‑1
                                      TCGCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATC              >  1:2974441/1‑49
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGA            <  1:6062077/49‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG             <  1:6246084/48‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG             <  1:3336818/48‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG             <  1:6958059/48‑1
                                        GCGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCG             <  1:4975626/48‑1
                                         CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA          >  1:5880792/1‑50
                                         CGAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAA          >  1:388032/1‑50
                                          GAGCGCGTCGCTACGCTAGCAAGCAAACATGAAACAGGAATAATCGAAAT         >  1:1084742/1‑50
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         >  1:5212929/1‑50
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         >  1:1181975/1‑50
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         <  1:3622998/50‑1
                                          GAGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAT         <  1:2861353/50‑1
                                           AGCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATG        <  1:3193605/50‑1
                                            GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG       <  1:1639217/50‑1
                                            GCGCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGG       <  1:1851709/50‑1
                                              GCGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGA     >  1:2536679/1‑50
                                               CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT    <  1:5311313/50‑1
                                               CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT    >  1:6803846/1‑50
                                               CGTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGAT    >  1:4910203/1‑50
                                                GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG   >  1:1863703/1‑50
                                                GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG   <  1:6603206/50‑1
                                                GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG   >  1:2792201/1‑50
                                                GTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATG   >  1:711192/1‑50
                                                 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  <  1:4269889/50‑1
                                                 TCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  <  1:5214043/50‑1
                                                                                                   
AAGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1962516‑1962565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGT  >  NC_000913/1979330‑1979378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.