| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 98 [0] | [0] 98 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 96 (1.040) | 60/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > NC_000913/2336633‑2336680 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT > 1:311154/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:3574662/1‑50 TGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT > 1:4191156/1‑50 GATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:6487783/1‑50 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:4424471/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:3129610/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:2162855/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTC < 1:2737164/50‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT < 1:4670135/49‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTT > 1:2501053/1‑49 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:1393592/48‑1 ATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATT < 1:7001321/48‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA < 1:450219/50‑1 TGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCA < 1:5909031/50‑1 GGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCAC > 1:5106495/1‑50 GCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACC < 1:2731088/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:4306827/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:3692184/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:3552247/50‑1 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC > 1:3459340/1‑50 AATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCAC < 1:1739919/50‑1 ATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACT < 1:5157142/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:5145447/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT < 1:3969906/50‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCAT > 1:1614857/1‑50 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 1:5076851/49‑1 CTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCA < 1:4077797/49‑1 TGATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATT > 1:4113276/1‑50 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:3873085/49‑1 ATGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTG < 1:1299744/49‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 1:4863921/50‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCC < 1:1865396/50‑1 TGGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGC > 1:6353469/1‑49 GGTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA > 1:331979/1‑50 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCAC < 1:4874510/50‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:6607509/49‑1 GTCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCA < 1:84756/49‑1 TCATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACA < 1:4427634/50‑1 CATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT > 1:2978602/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATT > 1:3006631/1‑50 ATTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACAT < 1:2110654/49‑1 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 1:5549598/50‑1 TTGTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTC < 1:7056715/50‑1 GTCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCT > 1:1963689/1‑50 TCCCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTT > 1:1519007/1‑50 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGT < 1:5129839/50‑1 CCAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTG < 1:6116105/49‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:2290094/50‑1 CAACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTG < 1:1428049/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:3046518/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:2419110/50‑1 AACGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGT < 1:3936889/50‑1 CGCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTA > 1:6469700/1‑49 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:4272240/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:6753014/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:2477521/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:1686510/50‑1 GCTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATA < 1:3502222/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:3935906/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG > 1:3916808/1‑50 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:6488650/50‑1 CTTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAG < 1:4696952/50‑1 TTACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:6377131/1‑50 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:4509140/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:2978736/1‑49 TACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:5744521/1‑49 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:3479255/49‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCC < 1:4473685/49‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:6461471/1‑48 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC < 1:209646/48‑1 ACTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGC > 1:5863744/1‑48 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGTCAG > 1:3542940/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAG > 1:704442/1‑50 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:6994304/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:6263099/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:3425422/49‑1 CTATTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCA < 1:1387405/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCA > 1:6722742/1‑50 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCC < 1:1687406/49‑1 TTGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGC < 1:4975860/48‑1 TGGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT > 1:5816953/1‑50 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT > 1:1933062/1‑50 GGTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCAT < 1:3409372/49‑1 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:5019383/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:3612554/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTT > 1:3307852/1‑50 GTTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATT < 1:651128/49‑1 TTATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTT > 1:463912/1‑50 TATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:3253648/1‑50 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT > 1:4888940/1‑49 ATATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTT < 1:2364580/49‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA < 1:2571331/50‑1 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:2847616/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTA > 1:7030736/1‑50 TATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTT < 1:6074228/49‑1 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:2025414/1‑50 ATTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > 1:5220214/1‑50 TTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC < 1:1605973/49‑1 CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2320094‑2320143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTTCACCACTCATTGCCACATTCCTTGTGTATAGCCAGCCATTTTTTAC > NC_000913/2336633‑2336680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |