| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,184,782 | Δ6,916 bp | ubiK–yqiI | ubiK, ygiL, yqiG, insC‑5, insD‑5, yqiG, yqiH, yqiI | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3184782 | 3191697 | 6916 | 110 [0] | [0] 110 | ubiK–yqiI | ubiK,ygiL,yqiG,insC‑5,insD‑5,yqiG,yqiH,yqiI |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3184781 | 0 (0.000) | 107 (1.160) | 60/96 | 0.0 | 100% | intergenic (‑315/‑59) | ribB/ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| ? | NC_000913 | 3191698 = | 0 (0.000) | intergenic (+2/+41) | yqiI/glgS | putative fimbrial protein YqiI/surface composition regulator | |||||
Only 100 of 110 total aligned reads displayed.
CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:5994150/50‑1CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT < 1:4785723/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:4231929/1‑50 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:4352677/1‑50 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA < 1:5996981/50‑1 GCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATA > 1:1541876/1‑50 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT < 1:6132576/50‑1 CTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATAT < 1:4876780/50‑1 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:2788869/1‑50 TAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC > 1:1590935/1‑50 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTA < 1:957367/50‑1 ATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATC < 1:6179719/48‑1 ATGATTAGCGGCAGCAACGCAGAGCTTCACATAATTCTGGTTTATATC < 1:3182868/48‑1 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA < 1:3081925/50‑1 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:3768404/1‑50 TGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:6847289/1‑50 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:194056/1‑49 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:493369/1‑49 GATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAA > 1:3335710/1‑49 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:6477414/50‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATA < 1:4432668/50‑1 ATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAAT < 1:2135112/49‑1 TTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC < 1:6215251/50‑1 TAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATAC > 1:5012181/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA > 1:6031434/1‑49 AGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACA > 1:4022130/1‑49 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATGCAA < 1:2743341/49‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 1:6101601/50‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 1:1213558/50‑1 GCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA < 1:1056168/50‑1 CGGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAA > 1:2247168/1‑49 GGCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACA < 1:5780523/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:2478472/50‑1 GCAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC < 1:2996663/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:4586135/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT < 1:1229047/50‑1 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:861190/1‑49 CAGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACAC > 1:4114763/1‑49 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:2750704/50‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:6232635/50‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTA < 1:7043624/50‑1 AGCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACT > 1:1023862/1‑49 GCAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA < 1:5828538/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:1035350/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAA < 1:2243031/50‑1 CAACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAA > 1:5086100/1‑49 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:6316534/50‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA < 1:4439577/50‑1 AACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAA > 1:555820/1‑50 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC > 1:974097/1‑50 ACGCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAAC < 1:2398064/50‑1 GCATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGG < 1:5622209/50‑1 CATAGCTTCACATAATTCTGGTTTATCTCTAATACAAACACTAAAACGGG > 1:4622955/1‑50 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG < 1:821412/50‑1 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG < 1:2071097/50‑1 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG > 1:6241713/1‑50 CATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGG > 1:1556445/1‑50 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:1178011/1‑50 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:672494/1‑50 ATAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:1797896/1‑50 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:4189239/1‑49 TAGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGC > 1:6368751/1‑49 AGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 1:6999916/1‑50 AGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 1:4113020/1‑50 AGCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA > 1:3213041/1‑50 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:2251153/49‑1 GCTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCA < 1:5370189/49‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATC < 1:3932890/50‑1 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:336024/1‑49 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:2204731/1‑49 CTTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:6066231/1‑49 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:1094144/1‑48 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:4970110/1‑48 TTCACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCAT > 1:3473479/1‑48 TTCACATAATTCTGGATTATATCTAATACAAACACTAAAACGGGCCAT > 1:660450/1‑48 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 1:4266046/1‑50 CACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGG > 1:6547365/1‑50 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC < 1:1097927/50‑1 ACATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGC < 1:5007299/50‑1 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC > 1:5303270/1‑50 CATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCC < 1:349850/50‑1 ATAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCC > 1:3807107/1‑50 TAATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCG > 1:1957228/1‑50 ATTCTGGTTTCTATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT > 1:2855642/1‑49 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:5768560/50‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTT < 1:1936306/50‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT < 1:2515555/49‑1 ATTCTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGT < 1:5113427/49‑1 CTGGTTTATATCTAATACAAACCCTAAAACGGGCCATCAGGCCCGTTAT < 1:4152385/49‑1 CTGGTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTAT < 1:4857210/49‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCA < 1:1201527/50‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATC < 1:4108167/49‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATC < 1:5291897/49‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT < 1:6739834/48‑1 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT > 1:6764343/1‑48 GTTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT < 1:1098884/48‑1 GTTTATAGCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATAT < 1:5915289/48‑1 TTTATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAG > 1:3358153/1‑50 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 1:5133738/49‑1 ATATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTG < 1:238860/49‑1 CGCTAATGATTAGCGGCAGCAACGCATAGCTTCACATAATTCTGGTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3184732‑3184781‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tATCTAATACAAACACTAAAACGGGCCATCAGGCCCGTTATATCAGTGC > NC_000913/3191698‑3191745 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |