| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 99 [0] | [0] 96 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 88 (1.000) | 52/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 104 total aligned reads displayed.
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:3012525/50‑1CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:512601/50‑1CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAAC < 1:5061123/50‑1 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA > 1:3986327/1‑50 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA < 1:2470274/50‑1 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:2506356/1‑50 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:2095166/1‑50 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:1334353/50‑1 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:4847352/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:2793975/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:6402320/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:1381095/1‑49 GACCTGTTTCTTTCTGCCCACGCGCGGCGATACAGAATTCAAACATTAT > 1:4483225/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA < 1:3998937/50‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:2930539/49‑1 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:6243632/49‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT < 1:1659340/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:1539676/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC > 1:6959903/1‑50 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC > 1:2288257/1‑50 TGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:278114/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:6024126/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:6671656/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 1:6318858/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:4715770/49‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:4737079/49‑1 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 1:668353/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:4527262/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC > 1:1761864/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:4376580/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:1409352/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:3473628/47‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:2180557/49‑1 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:3345529/1‑49 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:6603341/1‑49 GCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT > 1:5122463/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:730270/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:6960486/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGT < 1:1110660/48‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:7010689/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:5430392/1‑49 CACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:5735483/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA < 1:6939667/50‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:4056789/50‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:3356958/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:4808031/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA < 1:6250646/50‑1 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA < 1:1758210/50‑1 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:3359256/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:6694273/1‑49 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:2580613/1‑50 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:4311281/50‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:4441579/50‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:4442220/50‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:84307/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:4579368/1‑49 TATAGACTTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA > 1:284613/1‑49 TATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA < 1:2965059/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:2578808/1‑48 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:6493655/1‑48 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:4871313/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT < 1:1443903/50‑1 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT > 1:1207946/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG < 1:2461606/49‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 1:2396690/1‑50 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 1:1226646/1‑50 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:1223141/50‑1 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:5583548/50‑1 cTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:428145/2‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:1328091/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:3901124/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:3571915/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:5111706/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:3545112/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:4230943/1‑49 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC > 1:145093/1‑49 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:5863210/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:4002857/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:3324686/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG < 1:5411611/50‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG < 1:823284/50‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:1030337/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:6427654/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:1306945/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:286341/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:5855963/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGGCCTACG < 1:2160146/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:6426984/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:2131534/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:4659834/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:2827362/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:795199/50‑1 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:2214292/1‑48 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:3940451/1‑48 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:2659585/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:5470371/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:3723180/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:5116997/1‑49 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA < 1:4583392/50‑1 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA < 1:6512466/50‑1 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |