| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 118 [0] | [0] 120 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 114 (1.260) | 66/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
Only 100 of 118 total aligned reads displayed.
GTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATC > NC_000913/2994944‑2995039 | gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:941651‑M1/1‑48 (MQ=255)gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:5676960‑M1/1‑48 (MQ=255)gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:2275191‑M1/1‑48 (MQ=255)gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:4283483‑M1/1‑48 (MQ=255)gTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac > 1:1899299‑M1/1‑48 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact < 1:3311150‑M1/50‑4 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact < 1:4163923‑M1/50‑4 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact < 1:5685719‑M1/50‑4 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:4893556‑M1/1‑47 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa < 1:4874674‑M1/48‑2 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:5256644‑M1/1‑46 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:3074221‑M1/1‑46 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactt < 1:5289453‑M1/49‑5 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactt < 1:1603632‑M1/49‑5 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat > 1:2075984‑M1/1‑44 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat > 1:2098824‑M1/1‑44 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat < 1:2197525‑M1/50‑7 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:941508‑M1/50‑8 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:2700806‑M1/50‑8 (MQ=255) ttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:1592519‑M1/1‑42 (MQ=255) ttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:71070‑M1/1‑42 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:4960185‑M1/1‑40 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:3366976‑M1/1‑40 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:3330423‑M1/1‑40 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:1177923‑M1/1‑39 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:4339642‑M1/1‑39 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa < 1:1535655‑M1/49‑11 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa > 1:1907371‑M1/1‑37 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaac < 1:1925604‑M1/50‑15 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaac < 1:5952084‑M1/50‑15 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaac > 1:2548276‑M1/1‑36 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:6693050‑M1/49‑14 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:5390551‑M1/49‑14 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:4363190‑M1/49‑14 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:3714819‑M1/49‑14 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact > 1:6336613‑M1/1‑35 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact > 1:5936890‑M1/1‑35 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:5758888‑M1/50‑16 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:820552‑M1/50‑17 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt > 1:5534240‑M1/1‑34 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCTCacttatttaacaactt > 1:3517358‑M1/1‑33 (MQ=255) ccGCTATAGCTTTCTTCAGATCTTTATAGCCCccttatttaacaacttg > 1:1633918‑M1/1‑32 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttga > 1:5648302‑M1/1‑31 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttg < 1:3749327‑M1/48‑18 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTACATCCCacttatttaacaacttga > 1:7017022‑M1/1‑31 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa > 1:6834203‑M1/1‑30 (MQ=255) cTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa < 1:459645‑M1/50‑22 (MQ=255) cTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa < 1:3194956‑M1/50‑22 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:3841544‑M1/1‑28 (MQ=255) ataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:3735456‑M1/1‑27 (MQ=255) ataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:3594882‑M1/1‑27 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataa < 1:3905563‑M1/50‑25 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataa < 1:3215756‑M1/50‑25 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat < 1:3330863‑M1/48‑23 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:2203295‑M1/1‑26 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaagaa < 1:4499875‑M1/50‑25 (MQ=255) aGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataag > 1:2062531‑M1/1‑25 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg < 1:2781011‑M1/50‑27 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataag < 1:5307727‑M1/49‑26 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt > 1:5998304‑M1/1‑23 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt < 1:3052207‑M1/50‑28 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt > 1:3928212‑M1/1‑23 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt < 1:892453‑M1/50‑28 (MQ=255) tttCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtg > 1:3918051‑M1/1‑22 (MQ=255) tttCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtg > 1:5192055‑M1/1‑22 (MQ=255) gttcttcaGATCTTTATAGCCCacttagttaacaacttgaaaataaggtg < 1:6683507‑M1/49‑29 (MQ=255) ttcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt > 1:2727958‑M1/1‑21 (MQ=255) ttcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt > 1:3022894‑M1/1‑21 (MQ=255) ttcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt > 1:5275659‑M1/1‑21 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:5649145‑M1/49‑30 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtg < 1:3429466‑M1/48‑29 (MQ=255) ttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttt > 1:104551‑M1/1‑18 (MQ=255) tcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta > 1:5468705‑M1/1‑17 (MQ=255) tcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta > 1:206002‑M1/1‑17 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttac > 1:2052724‑M1/1‑16 (MQ=255) cAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta < 1:5106463‑M1/49‑34 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:1273107‑M1/1‑15 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc < 1:4021729‑M1/50‑36 (MQ=255) gATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacct < 1:2774711‑M1/50‑37 (MQ=255) gATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacct < 1:2488637‑M1/50‑37 (MQ=255) gATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacct < 1:141194‑M1/50‑37 (MQ=255) aTCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctg > 1:4342197‑M1/1‑13 (MQ=255) cTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:5318146‑M1/1‑11 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:4659727‑M1/1‑10 (MQ=255) ttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:4512411‑M1/1‑9 (MQ=255) ttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:2374618‑M1/1‑9 (MQ=255) ttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt > 1:6122669‑M1/1‑9 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggttg > 1:4160306‑M1/1‑8 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:6638496‑M1/49‑42 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:296566‑M1/49‑42 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggt < 1:2690382‑M1/48‑41 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:6376895‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgtttt < 1:77929‑M1/40‑33 (MQ=255) tataGCCCacttatttaacaactggaaaataaggtgtttt < 1:1335141‑M1/40‑33 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtt < 1:6845687‑M1/50‑45 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt < 1:6837261‑M1/49‑44 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt < 1:4616456‑M1/49‑44 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttacaa < 1:7083925‑M1/50‑49 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:3634277‑M1/1‑2 (MQ=255) cacttatttaacaacttgaaaataaggtgttttacctgggttgttacaa > 1:4723220‑M1/1‑1 (MQ=255) | GTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATC > NC_000913/2994944‑2995039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |