| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 122 [0] | [0] 117 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 116 (1.230) | 68/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 117 total aligned reads displayed.
CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG > NC_000913/377269‑377365 | aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 1:5371884‑M2/2‑1 (MQ=255)aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa < 1:2419021‑M2/2‑1 (MQ=255)aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:6211663‑M2/49‑50 (MQ=255)aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:1665480‑M2/49‑50 (MQ=255)aatcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:875244‑M2/49‑50 (MQ=255) atcgactggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:1440963‑M2/48‑49 (MQ=255) atcgacaggtaatctctcatactgaacagcgataaaagataaaggtgGAt < 1:4465844‑M2/3‑1 (MQ=255) atcgacaggtaatcactcatactgaacagcgataaaagataaaggtgGa > 1:1710406‑M2/48‑49 (MQ=255) acgacaggtaatcactcatactgaacagcgataaaagataaaggtgGATa < 1:6892561‑M2/4‑1 (MQ=255) cgacaggtaatcactcatactgaacagcgataaaagataaaggtgGAt > 1:4764652‑M2/46‑48 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:858760‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:4972017‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:1019181‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATaa < 1:6584626‑M2/5‑1 (MQ=255) gacaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAg > 1:6067259‑M2/45‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 1:5832658‑M2/44‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt > 1:2203464‑M2/44‑50 (MQ=255) acaggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGt < 1:6350801‑M2/7‑1 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTc > 1:2780635‑M2/43‑50 (MQ=255) caggtaatcactcatactgaacagcgataaaagataaaggagGATAAGTc > 1:5148350‑M2/43‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:1011628‑M2/42‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg > 1:5291017‑M2/42‑50 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg < 1:4641762‑M2/9‑1 (MQ=255) aggtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCg < 1:5891625‑M2/9‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg > 1:7060609‑M2/40‑50 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:5672165‑M2/11‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg < 1:3115842‑M2/11‑1 (MQ=255) gtaatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTg > 1:4032848‑M2/40‑50 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:5412274‑M2/12‑1 (MQ=255) taatcactcatactgaacagcgataaaagataaaggtgGATAAGTCGTgc < 1:3329570‑M2/12‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:1091148‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTgcg > 1:463647‑M2/34‑46 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAg < 1:4009907‑M2/16‑1 (MQ=255) actcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGa < 1:3153584‑M2/17‑1 (MQ=255) actcatactgaacagcgataaaagataaaggcgGATAAGTCGTtcg > 1:3933934‑M2/34‑46 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt < 1:6164814‑M2/18‑1 (MQ=255) ctcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGAt > 1:687904‑M2/33‑50 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:1569039‑M2/32‑50 (MQ=255) tcatactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg > 1:1207346‑M2/32‑50 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:3561665‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:1000301‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATg < 1:2271784‑M2/19‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGcc < 1:7022192‑M2/21‑1 (MQ=255) atactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGc < 1:3110967‑M2/20‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:6235308‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:5626800‑M2/22‑1 (MQ=255) tactgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt < 1:2020546‑M2/22‑1 (MQ=255) actgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCt > 1:5771074‑M2/28‑49 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTg < 1:935266‑M2/23‑1 (MQ=255) ctgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGa > 1:1869463‑M2/27‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:5631314‑M2/26‑50 (MQ=255) tgaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt > 1:3243108‑M2/26‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:2791926‑M2/25‑50 (MQ=255) gaacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg > 1:163784‑M2/25‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:630577‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGAt < 1:848381‑M2/25‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg < 1:1390649‑M2/26‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATg < 1:6981637‑M2/26‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:1309225‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:3372746‑M2/24‑50 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:3774875‑M2/27‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc < 1:1615475‑M2/27‑1 (MQ=255) aacagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:812509‑M2/24‑50 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGc > 1:5943970‑M2/23‑49 (MQ=255) acagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCg < 1:7094106‑M2/28‑1 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:4811491‑M2/22‑50 (MQ=255) cagcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGa > 1:3077004‑M2/22‑50 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:4019487‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc < 1:170009‑M2/30‑1 (MQ=255) agcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGAc > 1:6584809‑M2/21‑50 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg < 1:3259388‑M2/31‑1 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg > 1:5663772‑M2/20‑50 (MQ=255) gcgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACg > 1:724139‑M2/20‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:4415901‑M2/19‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:2317580‑M2/19‑50 (MQ=255) cgataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:4629033‑M2/19‑50 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:4539236‑M2/18‑49 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGc > 1:2931080‑M2/18‑49 (MQ=255) gataaaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCt < 1:4151166‑M2/33‑1 (MQ=255) ataaaagataaaggtaGATAAGTCGTGCGCAGATGCCTGAGGCGACGCTa < 1:6883361‑M2/34‑1 (MQ=255) aaagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgc < 1:3388926‑M2/37‑1 (MQ=255) aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg < 1:6537967‑M2/38‑1 (MQ=255) aagataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcg < 1:6584726‑M2/38‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc > 1:1580915‑M2/12‑50 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc < 1:6937068‑M2/39‑1 (MQ=255) agataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATgcgc > 1:2653113‑M2/12‑50 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg < 1:4435247‑M2/40‑1 (MQ=255) gataaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGcgcg > 1:5985796‑M2/11‑50 (MQ=255) taaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTc < 1:2701616‑M2/42‑1 (MQ=255) aaaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCt > 1:1530073‑M2/8‑50 (MQ=255) aaggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCtt < 1:5958024‑M2/44‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa > 1:4213047‑M2/6‑50 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa < 1:4269534‑M2/45‑1 (MQ=255) aggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTa < 1:1828437‑M2/45‑1 (MQ=255) ggtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt < 1:5505367‑M2/46‑1 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:2013063‑M2/4‑49 (MQ=255) gtgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATc < 1:4150827‑M2/47‑1 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTAt > 1:3811026‑M2/3‑48 (MQ=255) tgGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCa < 1:2299382‑M2/48‑1 (MQ=255) gATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAg < 1:6121348/49‑1 (MQ=255) | CCCGTATGCCGACTTCAAAGTGCCTGATGATTTGATGTGGTAAACATAGATAAGTCGTGCGCAGATGCCTGATGCGACGCTATGCGCGTCTTATCAG > NC_000913/377269‑377365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |