mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 24 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 624,589 | 0 | T | C | 33.3% | 178.6 / 123.5 | 123 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 3,499,600 | 0 | T | G | 31.4% | 94.4 / 16.2 | 52 | G51G (GGT→GGG) | yhfL | DUF4223 domain‑containing lipoprotein YhfL |
| * | NC_000913 | 589,934 | 0 | T | G | 30.5% | 134.5 / 19.2 | 59 | T341P (ACC→CCC) | nfrA | bacteriophage N4 receptor, outer membrane protein |
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.8% | 366.9 / 181.0 | 205 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 770,897 | 0 | T | G | 25.6% | 188.7 / 16.8 | 83 | intergenic (+286/‑561) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I |
| * | NC_000913 | 987,494 | 0 | T | G | 25.0% | 195.8 / 19.6 | 72 | intergenic (‑512/+91) | ompF/asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| * | NC_000913 | 3,947,823 | 0 | T | G | 25.0% | 211.5 / 15.2 | 81 | T49P (ACC→CCC) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 4,457,105 | 0 | A | G | 24.7% | 190.2 / 22.9 | 81 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 941,713 | 0 | T | G | 24.3% | 204.8 / 14.4 | 75 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 3,097,467 | 0 | T | G | 24.3% | 158.0 / 17.1 | 70 | G67G (GGT→GGG) | yggW | putative coproporphyrinogen‑III oxidase‑like protein YggW |
| * | NC_000913 | 175,694 | 0 | T | G | 24.2% | 167.3 / 11.0 | 67 | G196G (GGT→GGG) | clcA | chloride:H(+) antiporter ClcA |
| * | NC_000913 | 2,349,145 | 0 | A | C | 24.2% | 167.3 / 11.3 | 62 | F110V (TTC→GTC) | inaA | putative lipopolysaccharide kinase InaA |
| * | NC_000913 | 3,508,650 | 0 | C | G | 23.6% | 127.2 / 16.6 | 55 | A388A (GCG→GCC) | yhfW | putative mutase YhfW |
| * | NC_000913 | 434,393 | 0 | A | T | 23.0% | 184.7 / 21.5 | 74 | L313F (TTA→TTT) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 3,285,842 | 0 | G | T | 22.9% | 220.4 / 15.1 | 70 | C122F (TGC→TTC) | agaD | galactosamine‑specific PTS enzyme IID component |
| * | NC_000913 | 3,751,537 | 0 | A | C | 22.8% | 218.0 / 10.5 | 79 | V111G (GTT→GGT) | yiaT | outer membrane protein YiaT |
| * | NC_000913 | 898,598 | 0 | T | A | 22.0% | 133.4 / 11.1 | 50 | A27A (GCT→GCA) | rlmC | 23S rRNA m(5)U747 methyltransferase |
| * | NC_000913 | 888,014 | 0 | T | G | 21.7% | 217.6 / 10.8 | 83 | noncoding (44/81 nt) | rybB | small regulatory RNA RybB |
| * | NC_000913 | 1,015,516 | 0 | G | T | 21.2% | 234.9 / 21.9 | 85 | intergenic (+57/‑199) | pqiC/rmf | intermembrane transport lipoprotein PqiC/ribosome modulation factor |
| * | NC_000913 | 3,781,152 | 0 | A | G | 20.9% | 172.2 / 22.3 | 67 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase/tRNA (cytidine/uridine‑2'‑O)‑ribose methyltransferase |