| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 380,021 | (G)10→8 | intergenic (‑140/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,013 | 0 | G | . | 98.8% | 393.7 / ‑2.5 | 82 | intergenic (‑132/+56) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (49/32); total (50/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
| * | NC_000913 | 380,014 | 0 | G | . | 96.3% | 369.7 / 9.3 | 82 | intergenic (‑133/+55) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base G (1/2); new base . (48/30); total (50/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.59e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.26e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGG > NC_000913/379964‑380056 || tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAg > 1:970811/1‑50 (MQ=255) ggAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg > 1:3547610/1‑50 (MQ=255) gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg > 1:3816864/1‑50 (MQ=255) gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg > 2:3774535/1‑50 (MQ=255) gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg > 2:3341425/1‑50 (MQ=255) gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg < 1:4638137/49‑1 (MQ=255) gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAg < 1:869477/48‑1 (MQ=255) agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg < 2:3221894/50‑1 (MQ=255) agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg > 1:3206922/1‑50 (MQ=255) agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg > 2:1597686/1‑50 (MQ=255) agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg < 1:4657328/50‑1 (MQ=255) agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg < 2:398876/50‑1 (MQ=255) agaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg > 1:1420781/1‑50 (MQ=255) gaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggg > 1:3527857/1‑50 (MQ=255) gaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggg > 2:4068614/1‑50 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg > 2:1481579/1‑50 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg < 2:5223211/50‑1 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg < 2:4912811/50‑1 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg < 1:3358842/50‑1 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg > 1:753366/1‑50 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg < 2:4405706/50‑1 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggg > 1:1058332/1‑50 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggg > 1:393337/1‑50 (MQ=255) aaaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc > 1:3545887/1‑49 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggct < 1:930309/50‑3 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggct < 2:790222/50‑3 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc > 2:4009371/1‑48 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc < 1:2108316/49‑2 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc > 1:1578376/1‑48 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggc > 2:625185/1‑48 (MQ=255) aaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggggggggct > 1:1944970/1‑47 (MQ=255) aTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggggct > 1:3799578/1‑47 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCgg > 1:5633222/1‑50 (MQ=255) aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCgg > 1:2809570/1‑50 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCgg < 1:4010991/49‑1 (MQ=255) tCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGc < 1:1697416/50‑1 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCgg > 1:2848652/1‑48 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCa < 2:3253702/50‑1 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAg < 1:2753831/50‑1 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAgg > 2:1598158/1‑50 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAgg < 2:2724323/50‑1 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAgg > 1:1519131/1‑50 (MQ=255) ggTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAgg > 1:1217652/1‑50 (MQ=255) gTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATGGGCAgg > 1:819280/1‑50 (MQ=255) gTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg < 1:339759/50‑1 (MQ=255) gTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg < 2:2006867/50‑1 (MQ=255) tGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg > 1:5353616/1‑49 (MQ=255) tGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg > 2:2372634/1‑49 (MQ=255) tGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGa < 2:1910160/50‑1 (MQ=255) tGAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGa < 1:1809770/50‑1 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg > 2:1311101/1‑48 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAggg > 1:3087333/1‑48 (MQ=255) agtgtgGGCGGAAAACAGAGAGGAAA‑‑GGGGGGGGTTAATCGGCAGGGAAg < 2:32678/48‑1 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGaa < 1:2362342/49‑1 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAg < 1:1759004/50‑1 (MQ=255) aaTGTGGTCGGAAAACAAAGAGGAAA‑‑‑GGGGGGGCTAATCGGCAGGGAAg < 1:710456/49‑1 (MQ=255) aaTGTGGCCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAg > 2:2059371/1‑50 (MQ=255) aTGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGGCTAATCGGCAGGGAAg < 2:3398515/50‑1 (MQ=255) aTGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAgg < 1:4855223/50‑1 (MQ=255) aTGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAgg > 1:4500709/1‑50 (MQ=255) aTGTGGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAgg < 1:1922611/50‑1 (MQ=255) tgGTCGGTAAGCAAAAAGGAAA‑‑GGGGGTCGCTAATCGGCAGGGAAGgcc < 2:433634/49‑1 (MQ=16) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccg < 2:2654084/50‑1 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccg < 1:1427721/50‑1 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccg > 2:3465837/1‑50 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgcc < 2:4843172/49‑1 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgcc < 1:3362292/49‑1 (MQ=255) ggTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccgc > 1:2507683/1‑50 (MQ=255) gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccgcc > 2:4357847/1‑50 (MQ=255) gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccgcc > 2:4468646/1‑50 (MQ=255) gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccgc < 2:3734380/49‑1 (MQ=255) gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccgc < 2:2799703/49‑1 (MQ=255) gTCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGgccgc < 1:3543010/49‑1 (MQ=255) tCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGccc > 1:4220618/1‑50 (MQ=255) tCGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGccc > 1:4974248/1‑50 (MQ=255) tCGGAAAACAAAGAGG‑‑AGAGGGGGGGGCTAATCGGCAGGGAAGGCCGccc > 2:3967979/1‑50 (MQ=255) cGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:2790489/1‑50 (MQ=255) cGGAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGcccc > 1:559672/1‑50 (MQ=255) ggAAAACAAAGAGGGAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg > 2:775362/1‑50 (MQ=255) ggAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg > 2:3806156/1‑50 (MQ=255) ggAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg < 2:877789/50‑1 (MQ=255) gAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg > 1:3200530/1‑49 (MQ=255) gAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg > 2:790856/1‑49 (MQ=255) gAAAACAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg > 2:4743399/1‑49 (MQ=255) aaaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 2:2756310/1‑50 (MQ=255) aaaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 2:3613605/1‑50 (MQ=255) aaaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 1:1432921/1‑50 (MQ=255) aaaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGACGCCCCGGa > 1:56348/1‑50 (MQ=255) aaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 2:4404429/1‑49 (MQ=255) aaaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGAt < 1:3995954/50‑1 (MQ=255) aaCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 2:5163297/1‑48 (MQ=255) aCAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg < 2:1620789/50‑1 (MQ=255) cAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 1:2985008/1‑50 (MQ=255) cAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 1:4255005/1‑50 (MQ=255) cAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 2:1782287/1‑50 (MQ=255) cAAAGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCCGATAgc > 2:1677741/1‑50 (MQ=255) aaGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgg > 1:5201780/1‑50 (MQ=255) aaGAGGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgg < 2:4140276/50‑1 (MQ=255) agagGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcggg > 1:504016/1‑50 (MQ=255) agagGAAA‑‑GGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcggg > 2:28701/1‑50 (MQ=255) || TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGG > NC_000913/379964‑380056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |