BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,400,309	Δ1 bp	coding (1465/1527 nt)	abgT ←	p‑aminobenzoyl glutamate:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,400,308	0	A	.	100.0%	573.8 / NA	115	coding (1466/1527 nt)	abgT	p‑aminobenzoyl glutamate:H(+) symporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (50/65); total (50/65)

Only 100 of 121 total aligned reads displayed.

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

tGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               >  2:3849553/1‑50 (MQ=255)

tGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               >  1:2184996/1‑50 (MQ=255)

 gggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               >  2:5248161/1‑49 (MQ=255)

 gggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCa                                               >  2:1401252/1‑49 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             <  2:881822/50‑3 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             >  1:3737193/1‑48 (MQ=255)

          cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  1:105893/50‑1 (MQ=255)

          cccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGcc                                   <  2:142203/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  2:2593418/1‑50 (MQ=255)

            cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  1:4513428/50‑1 (MQ=255)

            cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  2:5053928/50‑1 (MQ=255)

            cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCAt                                 <  1:491738/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:2868957/1‑50 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:5561818/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:2910591/1‑50 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  2:5561520/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:1400175/1‑50 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               <  2:2709892/50‑1 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               <  1:2444096/50‑1 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  2:129906/1‑50 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  2:5048060/1‑50 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  1:4161126/1‑50 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  2:2845077‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  2:1654383‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  2:2892058‑M1/49‑2 (MQ=255)

               aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  2:3411474/1‑49 (MQ=38)

               aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  2:4617045/1‑49 (MQ=38)

               aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  1:344104/1‑49 (MQ=38)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  1:741816‑M1/1‑47 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  2:3025092‑M1/1‑47 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:48262‑M1/50‑4 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:3636946‑M1/50‑4 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  2:2941526‑M1/1‑46 (MQ=255)

                   aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  2:5359301‑M1/1‑45 (MQ=255)

                   aTCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  2:565829‑M1/1‑45 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCCGCCCTaccatg                           >  2:2368035/1‑46 (MQ=16)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  2:2321106‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           <  2:4128520‑M1/48‑5 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:2131196‑M1/1‑43 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       <  1:3184254‑M1/50‑9 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       <  2:3479211‑M1/50‑9 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       <  1:4869995‑M1/50‑9 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        <  1:4107620‑M1/49‑8 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  2:3379439‑M1/1‑42 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  1:4329054‑M1/1‑42 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  1:4832358‑M1/1‑42 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  2:879594‑M1/1‑42 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  2:861885‑M1/1‑42 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  1:45351‑M1/1‑42 (MQ=255)

                       gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                      <  1:3308118‑M1/50‑10 (MQ=255)

                       gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                      <  2:3969969‑M1/50‑10 (MQ=255)

                       gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       >  1:602353‑M1/1‑41 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATTCtatgcagaaa                     <  2:2266769‑M1/50‑11 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                    <  2:5659964‑M1/50‑12 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  2:3443404‑M1/1‑39 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:2346319‑M1/1‑39 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:4481053‑M1/1‑39 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  2:874164‑M1/50‑13 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  2:1934641‑M1/50‑13 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                    >  2:469216‑M1/1‑38 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  2:2451490‑M1/1‑37 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 <  1:4864042‑M1/50‑15 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 <  1:3951220‑M1/50‑15 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 <  1:167286‑M1/50‑15 (MQ=255)

                             cGACATGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  2:2496700‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:5499760‑M1/1‑35 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               <  1:583598‑M1/50‑17 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:3413822‑M1/50‑18 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  2:425361‑M1/50‑18 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  1:5407086‑M1/50‑19 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:856107‑M1/1‑32 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             <  2:1164952‑M1/50‑19 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:3832447‑M1/1‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            <  1:1791080‑M1/50‑20 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  2:4919758‑M1/1‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            <  2:4290917‑M1/50‑20 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:1088436‑M1/50‑22 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:2365488‑M1/50‑22 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         <  1:4032372‑M1/50‑23 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         >  1:31150‑M1/1‑28 (MQ=255)

                                     tcccacGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:3956410‑M1/48‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:2045150‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        >  1:458190‑M1/1‑27 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        >  1:5423025‑M1/1‑27 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  2:3648561‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  2:4777077‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:2102657‑M1/50‑24 (MQ=255)

                                      aCCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       >  1:1564059‑M1/1‑26 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  1:3222170‑M1/49‑25 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatactgtcgatgg      <  2:3495378‑M1/50‑26 (MQ=255)

                                       ccAAGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatg       <  2:57196‑M1/49‑25 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     >  1:2353188‑M1/1‑24 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     >  1:3053090‑M1/1‑24 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  2:1932833‑M1/50‑28 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  1:2960382‑M1/1‑23 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   <  2:2469998‑M1/50‑29 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   >  1:2451668‑M1/1‑22 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   <  1:3237429‑M1/50‑29 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   <  1:927897‑M1/50‑29 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  2:4321077‑M1/1‑21 (MQ=255)

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`