BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,090,341	Δ1 bp	intergenic (+89/‑6)	yggI → / → endA	conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,090,341	0	T	.	100.0%	632.3 / NA	126	intergenic (+89/‑6)	yggI/endA	conserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (57/69); total (57/69)

Only 100 of 126 total aligned reads displayed.

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGC  >  NC_000913/3090296‑3090385

aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                         >  1:555346/1‑50 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc                                        >  1:370858‑M1/1‑49 (MQ=255)

 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc                                        <  2:4622908‑M1/50‑2 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct                                      <  1:1611616‑M1/50‑4 (MQ=255)

   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct                                      <  1:531363‑M1/50‑4 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                     <  2:12673‑M1/50‑5 (MQ=255)

    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                     >  2:3395769‑M1/1‑46 (MQ=255)

    aaaCAGCTTTCGCTAAGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                     <  2:3350892‑M1/50‑5 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                    <  2:1339706‑M1/50‑6 (MQ=255)

     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                    <  1:5124512‑M1/50‑6 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                   <  1:3257777‑M1/50‑7 (MQ=255)

      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                   <  2:3278858‑M1/50‑7 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                  >  1:3228410‑M1/1‑43 (MQ=255)

       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                  >  2:4060622‑M1/1‑43 (MQ=255)

         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                <  2:2794667‑M1/50‑10 (MQ=255)

          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               <  2:4060706‑M1/50‑11 (MQ=255)

          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               >  2:2315248‑M1/1‑40 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              >  2:1759079‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              >  1:3167911‑M1/1‑39 (MQ=255)

           tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              >  1:4716113‑M1/1‑39 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:2592013‑M1/1‑37 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  2:4260234‑M1/1‑37 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  2:298834‑M1/1‑37 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                             <  1:390149‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                             <  1:3876284‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                             <  2:3478700‑M1/49‑13 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              <  2:3665426‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              <  2:2200956‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              <  2:4831103‑M1/48‑12 (MQ=255)

             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              <  1:2319604‑M1/48‑12 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:3253595‑M1/1‑36 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            <  1:2185995‑M1/49‑14 (MQ=255)

              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:4850330‑M1/1‑36 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                          <  1:3568706‑M1/50‑16 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                          <  2:5622295‑M1/50‑16 (MQ=255)

               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg                           <  1:233579‑M1/49‑15 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                         <  1:1133272‑M1/50‑17 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                         >  1:930610‑M1/1‑34 (MQ=255)

                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                         <  1:4440667‑M1/50‑17 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        >  1:2258717‑M1/1‑33 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        >  2:729318‑M1/1‑33 (MQ=255)

                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        >  1:4794230‑M1/1‑33 (MQ=255)

                  aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc                       >  2:1503590‑M1/1‑32 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        <  2:3020698‑M1/48‑18 (MQ=255)

                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        <  1:3052868‑M1/48‑18 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  2:3837494‑M1/1‑30 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:3140829‑M1/1‑30 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     <  1:1883063‑M1/50‑21 (MQ=255)

                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcct                     <  2:818364‑M1/50‑21 (MQ=255)

                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                    <  1:5258940‑M1/50‑22 (MQ=255)

                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                    <  2:530817‑M1/50‑22 (MQ=255)

                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                    <  2:3645585‑M1/50‑22 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   >  1:312371‑M1/1‑28 (MQ=255)

                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   >  2:4092235‑M1/1‑28 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                  >  1:4402134‑M1/1‑27 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  2:3303210‑M1/49‑23 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  2:3631872‑M1/49‑23 (MQ=255)

                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  1:4669127‑M1/49‑23 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                 <  2:3331559‑M1/50‑25 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                 >  1:5525720‑M1/1‑26 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                  <  1:1261576‑M1/49‑24 (MQ=255)

                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                  <  2:4947243‑M1/49‑24 (MQ=255)

                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                >  1:3619764‑M1/1‑25 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                >  2:1561932‑M1/1‑24 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                >  1:3142069‑M1/1‑24 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                >  2:1861735‑M1/1‑24 (MQ=255)

                          ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                >  1:1944834‑M1/1‑24 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta              <  2:4081651‑M1/50‑28 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta              <  1:3836692‑M1/50‑28 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt               <  1:4438878‑M1/49‑27 (MQ=255)

                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt               >  2:5621517‑M1/1‑23 (MQ=255)

                           gCTCGTTGTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt               <  2:1120137‑M1/49‑27 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa             <  1:3971591‑M1/50‑29 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa             <  2:5226070‑M1/50‑29 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa             >  1:2679297‑M1/1‑22 (MQ=255)

                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa             >  2:1756404‑M1/1‑22 (MQ=255)

                             tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac            >  1:2475205‑M1/1‑21 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:789785‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  2:1981881‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:2921189‑M1/1‑19 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc           <  2:2519453‑M1/49‑31 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc           <  1:1980227‑M1/49‑31 (MQ=255)

                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac            <  1:3008901‑M1/48‑30 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         >  1:976066‑M1/1‑18 (MQ=255)

                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         >  2:5416047‑M1/1‑18 (MQ=255)

                                 tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         >  1:5346742‑M1/1‑17 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta       >  1:1866004‑M1/1‑16 (MQ=255)

                                  ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct        <  1:4314594‑M1/49‑34 (MQ=255)

                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta       <  1:5591364‑M1/49‑35 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     >  2:1442364‑M1/1‑14 (MQ=255)

                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac      <  2:3333368‑M1/49‑36 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc    >  2:2806598‑M1/1‑13 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc    >  1:2624399‑M1/1‑13 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc    >  2:5128307‑M1/1‑13 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc    <  2:5071057‑M1/50‑38 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     <  2:5554640‑M1/49‑37 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     <  1:3365967‑M1/49‑37 (MQ=255)

                                     acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     <  1:1592089‑M1/49‑37 (MQ=255)

                                      cacGGAG‑AAGTGactacactagcgggattctttttgttaacccctacccc   <  1:3028711‑M1/50‑39 (MQ=255)

                                       acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca  <  2:902642‑M1/50‑40 (MQ=255)

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGC  >  NC_000913/3090296‑3090385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`