| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,948,799 | 1 | . | G | 99.0% | 373.1 / ‑2.8 | 96 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (48/47); total (48/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGA > NC_000913/3948750‑3948843 | ttAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc > 1:3610291/1‑50 (MQ=255) tAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGcc < 2:5414085/49‑1 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gg > 2:722578/1‑50 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑g < 2:70410/49‑1 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑g < 1:4542484/49‑1 (MQ=255) aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑g < 2:4730313/49‑1 (MQ=255) aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggg > 1:3733469/1‑50 (MQ=255) aCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gg < 1:3952539/49‑1 (MQ=255) cGGTGGCGCTGCTTTCTCCCGGCACTACCGGTTTACTCAAAATGCC‑‑gggg > 2:3545061/1‑50 (MQ=255) gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggg < 2:1229609/50‑1 (MQ=255) gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggg > 2:836507/1‑50 (MQ=255) tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggggg > 2:3004245/1‑49 (MQ=255) tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggggg > 2:166275/1‑49 (MQ=255) tGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggggg < 1:4255038/50‑2 (MQ=255) ggCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt > 1:1163785/1‑48 (MQ=255) gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt < 1:4268562/49‑3 (MQ=255) ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTa < 2:3832547/50‑1 (MQ=255) ctgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTa < 1:757397/50‑1 (MQ=255) tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTaa > 2:3228304/1‑50 (MQ=255) gctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt > 2:958266/1‑50 (MQ=255) gctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt > 2:4827294/1‑50 (MQ=255) ctTTCTCCCGGCACTTCCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 2:1316866/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTaa < 1:3618003/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTaa < 2:5173418/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTaa < 1:5562009/48‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 1:2520454/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 2:4792360/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 1:2006385/49‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATg < 1:4609130/50‑1 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATg > 1:3884681/1‑50 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATg < 1:5670001/50‑1 (MQ=255) tttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:2932735/1‑50 (MQ=255) ttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 2:1730736/1‑49 (MQ=255) ttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 2:2261755/1‑49 (MQ=255) ttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 2:2388499/1‑49 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATggg < 2:5280681/49‑1 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg < 2:2817360/48‑1 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg < 1:3520515/48‑1 (MQ=255) tctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGa > 2:4349782/1‑50 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt > 2:1550180/1‑50 (MQ=255) tcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtc > 1:474549/1‑50 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 1:2053928/1‑50 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtc < 1:1054412/48‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt < 1:2383910/47‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt < 1:996857/47‑1 (MQ=255) cGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAtctc > 2:2751969/1‑49 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCa < 1:2612490/50‑1 (MQ=255) gCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTGATGGGATCTCCAg > 2:5116728/1‑50 (MQ=255) gCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAg < 1:1758890/50‑1 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 2:1528742/1‑50 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt < 2:1988942/50‑1 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:4956219/1‑50 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:5582095/1‑50 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:2675436/1‑50 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:1859364/1‑50 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt < 2:3113124/50‑1 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTACAGt > 2:3327076/1‑50 (MQ=255) aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCCGt > 2:3315990/1‑49 (MQ=255) aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 2:4696100/1‑49 (MQ=255) aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:5422432/1‑49 (MQ=255) aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 2:3326516/1‑49 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:2774668/1‑48 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:3951379/1‑48 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:2469804/50‑1 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:5553388/50‑1 (MQ=255) cTACCGATTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:4937391/1‑48 (MQ=38) ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgagag < 1:1649067/50‑1 (MQ=255) ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgaga < 1:3907232/49‑1 (MQ=255) ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgag < 2:2247946/48‑1 (MQ=255) ccGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgag < 1:3254609/48‑1 (MQ=255) cGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTgagaga < 2:222298/50‑1 (MQ=255) cGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 2:3723959/1‑46 (MQ=255) gTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:1973662/1‑45 (MQ=255) gTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 2:2467364/1‑45 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:4945175/1‑44 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:1638138/1‑44 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:1378866/50‑1 (MQ=255) tttACTCAAAATGCCG‑GGGGGGTGGGAATGGGATCTCCAGTGAGAGATc > 1:3349125/1‑49 (MQ=255) ttACTCAAAATGCCGGGGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 2:1308749/49‑1 (MQ=255) ttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 2:4048971/49‑1 (MQ=255) ttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 2:4070531/49‑1 (MQ=255) tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:2755971/1‑48 (MQ=255) tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg > 1:4010523/1‑48 (MQ=255) tACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGa < 1:5522362/49‑1 (MQ=255) tACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:351620/49‑1 (MQ=255) aCTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:809695/49‑1 (MQ=255) aCTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGaa < 1:331479/49‑1 (MQ=255) cTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 2:2668353/49‑1 (MQ=255) cTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAg < 1:4440934/49‑1 (MQ=255) cTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:772152/50‑1 (MQ=255) cAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg > 1:1146076/1‑50 (MQ=255) aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg < 2:1949046/49‑1 (MQ=255) aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg < 2:1625694/48‑1 (MQ=255) aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 2:5336729/1‑50 (MQ=255) aaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 2:2897127/1‑50 (MQ=255) aaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc < 1:4508522/50‑1 (MQ=255) aaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 2:3522246/1‑49 (MQ=255) aaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 2:2134404/1‑49 (MQ=255) aaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 2:5565980/1‑49 (MQ=255) aTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:4413876/1‑48 (MQ=255) | TTAACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGA > NC_000913/3948750‑3948843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |