| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,980,957 | (G)6→7 | coding (71/1386 nt) | yifK → | putative transporter YifK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,980,951 | 1 | . | G | 98.7% | 295.3 / ‑2.8 | 75 | coding (65/1386 nt) | yifK | putative transporter YifK |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base G (38/36); total (39/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.50e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980902‑3980995 | ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 2:4917541/50‑1 (MQ=255)ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt > 1:1618763/1‑50 (MQ=255)ccAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCt < 2:541720/50‑1 (MQ=255) cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g < 1:4472415/50‑1 (MQ=255) cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g < 1:3521063/50‑1 (MQ=255) cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:2832191/1‑50 (MQ=255) cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 2:4739901/1‑50 (MQ=255) cAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑g > 1:1707059/1‑50 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg < 1:3682758/50‑1 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gg > 2:2474441/1‑50 (MQ=255) agagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gc > 2:2992501/1‑49 (MQ=255) gagCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggg > 2:4223040/1‑50 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 1:1781701/1‑50 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 2:4021590/1‑50 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 1:2182515/1‑50 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 2:1870197/1‑50 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg < 1:5394577/50‑1 (MQ=255) agCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggg > 1:4423099/1‑50 (MQ=255) gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggg < 2:2826832/50‑1 (MQ=255) gCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggg > 2:3439615/1‑50 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggg > 2:3770317/1‑50 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggg > 2:2301661/1‑50 (MQ=255) cTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggg < 1:1016290/50‑1 (MQ=255) tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 2:2736199/1‑49 (MQ=255) tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 1:5294522/1‑49 (MQ=255) tACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg < 2:4954112/50‑2 (MQ=255) tACAGCGTGGGCTGCAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 2:29735/1‑49 (MQ=255) aCAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑ggggggg > 2:2796552/1‑48 (MQ=255) cAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑gggggggc < 2:531370/49‑3 (MQ=255) cGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCa < 1:599752/50‑1 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAt > 2:3423723/1‑50 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAt < 2:4515226/50‑1 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAt > 1:2146829/1‑50 (MQ=255) gTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAt > 1:1213576/1‑50 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt < 1:3579624/50‑1 (MQ=255) tGGGCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCAtt < 2:2536014/50‑1 (MQ=255) ggCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTgg > 2:2714790/1‑50 (MQ=255) ggCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCCTTTGc > 2:1067454/1‑50 (MQ=255) gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc > 2:1454550/1‑50 (MQ=255) gCTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGc > 1:1096480/1‑50 (MQ=255) cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCg > 1:5405922/1‑50 (MQ=255) cTGGAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCg < 1:1288966/50‑1 (MQ=255) ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc > 2:4704925/1‑50 (MQ=255) ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc > 1:2653102/1‑50 (MQ=255) ggAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTc > 2:2285776/1‑50 (MQ=255) gAAGCTCGACATATCGATCTCAGCGCCCTGGGGGGGCACCATTGGCGTc < 1:3211920/49‑1 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg < 2:2566457/50‑1 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg < 1:2670008/50‑1 (MQ=255) gAAGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCg < 2:4829773/50‑1 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCgg > 2:913538/1‑50 (MQ=255) aaGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCgg > 2:131730/1‑50 (MQ=255) aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc < 1:2093005/50‑1 (MQ=255) aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc > 1:3622315/1‑50 (MQ=255) aGCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGc > 1:5359848/1‑50 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGcc < 2:5518237/50‑1 (MQ=255) gCTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGcc > 1:2823288/1‑50 (MQ=255) cTCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCt < 2:2246480/50‑1 (MQ=255) tCGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTg > 2:2109993/1‑50 (MQ=255) cGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt > 1:3932621/1‑50 (MQ=255) cGACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt > 2:291971/1‑50 (MQ=255) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTg < 2:5592354/48‑1 (MQ=39) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt < 2:2724639/50‑1 (MQ=255) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt > 1:5538219/1‑50 (MQ=255) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt < 2:4188491/50‑1 (MQ=255) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt > 2:3588663/1‑50 (MQ=255) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt < 2:5168122/50‑1 (MQ=255) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt < 1:1221247/49‑1 (MQ=39) gACATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGt < 1:4281024/49‑1 (MQ=39) aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGttt < 2:1464808/50‑1 (MQ=255) aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGttt < 2:2260726/50‑1 (MQ=255) aCATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGtt > 1:4982578/1‑49 (MQ=39) cATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa > 2:719886/1‑50 (MQ=255) cATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa > 1:2832747/1‑50 (MQ=255) cATATCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTa > 2:405416/1‑50 (MQ=255) atatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAt < 2:2523355/50‑1 (MQ=255) atatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTAt > 1:2444554/1‑50 (MQ=255) tatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg < 2:1619826/50‑1 (MQ=255) tatCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATg < 2:5691569/50‑1 (MQ=255) atCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgg > 1:1763134/1‑50 (MQ=255) tCGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggg < 2:5616764/50‑1 (MQ=255) cGAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg > 2:5517584/1‑50 (MQ=255) gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATggggg > 1:2288497/1‑50 (MQ=255) gAACTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATgggg < 2:2863887/49‑1 (MQ=39) aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 1:5653826/50‑1 (MQ=255) aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc < 2:3404350/50‑1 (MQ=255) aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc > 2:3305437/1‑50 (MQ=255) aaCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgc > 2:1321997/1‑50 (MQ=255) aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc < 1:2968384/50‑1 (MQ=255) aCTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgcc < 2:2319054/50‑1 (MQ=255) cTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg > 1:2418639/1‑50 (MQ=255) cTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg < 2:3726293/50‑1 (MQ=255) cTCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccg > 2:5421285/1‑50 (MQ=255) tCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 2:4737033/1‑50 (MQ=255) tCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 2:4028239/1‑50 (MQ=255) tCATCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 2:5288757/1‑50 (MQ=255) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc > 1:4899912/1‑48 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGgccgc < 1:5484362/48‑1 (MQ=39) aTCGCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCa < 2:3624065/50‑1 (MQ=255) gCCCTGGGGGGGCACCATTTGCGTCGGCCTGTTTATGGGTGCCGCCAGTa > 2:1404454/1‑50 (MQ=255) gCCCTGGGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTa < 2:5229945/50‑1 (MQ=255) | CCAGAGCTACAGCGTGGGCTGGAAGCTCGACATATCGAACTCATCGCCCT‑GGGGGGCACCATTGGCGTCGGCCTGTTTATGGGGGCCGCCAGTA > NC_000913/3980902‑3980995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |