| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 161 [0] | [0] 160 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 158 (1.060) | 78/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 158 total aligned reads displayed.
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:5442948/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 2:4915673/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:2807462/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 2:2741461/50‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:3810904/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 1:5287666/1‑50 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:2072175/49‑1 TCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA > 2:1649189/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 2:3521778/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 1:1206495/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 2:5098322/1‑49 CAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC > 2:767550/1‑49 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:2535597/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:4600424/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 2:5396390/49‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:632666/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:2984942/50‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT < 1:1739691/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 2:4257280/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG < 2:362361/50‑1 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:3026622/1‑50 ACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATG > 1:1157345/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 2:4222213/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:5005014/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 2:4976208/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 2:573985/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:5355969/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 2:4178287/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 2:844950/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 2:5270560/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:3208193/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 2:409664/50‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 2:4790339/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:1189671/49‑1 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:2712870/1‑48 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 2:1326028/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:4822528/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACA < 2:3713123/49‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:3643362/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 2:4994374/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:3986911/1‑48 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 2:1068023/1‑48 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:3173050/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 2:3992361/1‑49 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 2:282240/1‑49 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:5103986/49‑1 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGCGTACTA > 2:3124817/1‑50 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 2:5116431/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:1613185/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2054422/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:3519079/49‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 1:1133825/49‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 2:2211701/49‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA < 2:1846295/49‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:899625/48‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:153411/48‑1 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:5324881/1‑49 ATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 2:352253/1‑49 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 2:145088/1‑48 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 2:4554080/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 2:2377583/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:3066550/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 2:3024836/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:1953403/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 2:1562587/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:3247798/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA < 2:3846982/50‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:2611261/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 2:927540/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 2:1110311/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:2873008/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 2:2760191/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 2:554328/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:5074342/50‑1 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:1287162/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT > 1:808151/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 2:4120825/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1500234/1‑49 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:1724/1‑49 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 2:3331245/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAg < 2:4726540/50‑2 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 2:206782/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:3729751/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 2:3377565/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:4245051/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:2852739/1‑49 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCACTCGTTTTA < 1:3160331/49‑1 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 2:5258910/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1219398/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:10969/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:353266/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 2:4061616/1‑50 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 2:2755723/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 2:136854/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:2295685/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 2:4586929/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1561317/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:458953/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:5457006/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:3989744/50‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |