| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 332,366 | Δ44,951 bp | pdeL–yaiL | 39 genes pdeL, yahB, yahC, yahD, yahE, yahF, yahG, yahH, yahI, yahJ, yahK, yahL, yahM, yahN, yahO, prpR, prpB, prpC, prpD, prpE, codB, codA, cynR, cynT, cynS, cynX, lacA, lacY, lacZ, lacI, mhpR, mhpA, mhpB, mhpC, mhpD, mhpF, mhpE, mhpT, yaiL |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 332366 | 377316 | 44951 | 212 [0] | [0] 213 | pdeL–yaiL | pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 332365 | 0 (0.000) | 206 (1.380) | 80/98 | 0.0 | 100% | intergenic (+489/‑6) | yahV/pdeL | protein YahV/DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| ? | NC_000913 | 377317 = | NA (NA) | intergenic (+6/+218) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
Only 100 of 212 total aligned reads displayed.
GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGT > NC_000913/332316‑332412 | ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 2:1402646/50‑1 (MQ=255)ggAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg < 2:1639817/50‑1 (MQ=255) gAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGgtg > 2:3897414/1‑49 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat < 1:614675‑M1/50‑4 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:4106814‑M1/1‑47 (MQ=255) aTCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGga > 1:809104‑M1/1‑47 (MQ=255) tCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgat > 2:2614583‑M1/1‑46 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 2:5395120‑M1/50‑7 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag > 1:4504450‑M1/1‑44 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataag < 2:1677552‑M1/50‑7 (MQ=255) gACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataa < 2:2440804‑M1/49‑6 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt < 1:776461‑M1/50‑8 (MQ=255) aCAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagt > 2:1587842‑M1/1‑43 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 2:1015353‑M1/50‑9 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc < 2:2690339‑M1/50‑9 (MQ=255) cAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtc > 1:3149768‑M1/1‑42 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 1:5057953‑M1/1‑41 (MQ=255) aGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcg > 2:4878258‑M1/1‑41 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt > 1:5661233‑M1/1‑40 (MQ=255) ggTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgt > 1:5084106‑M1/1‑40 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:1841171‑M1/50‑12 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg > 2:4394287‑M1/1‑39 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:5158606‑M1/50‑12 (MQ=255) gTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtg < 1:4788285‑M1/50‑12 (MQ=255) aaTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:1229625‑M1/1‑37 (MQ=255) aTCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgc < 2:1519417‑M1/50‑15 (MQ=255) tCACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 2:2971995‑M1/1‑35 (MQ=255) cACTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 2:4141189‑M1/1‑34 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcaga < 1:1107363‑M1/50‑18 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcaga < 1:3019173‑M1/50‑18 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 1:5029471‑M1/1‑33 (MQ=255) aCTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcg > 2:5283224‑M1/1‑33 (MQ=255) cTCATACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagat < 1:2582358‑M1/50‑19 (MQ=255) aTACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcc > 2:613433‑M1/1‑29 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:1111675‑M1/1‑28 (MQ=255) tACTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 2:304593‑M1/1‑28 (MQ=255) aCTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcct > 1:3981792‑M1/1‑27 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctga > 2:696529‑M1/1‑26 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctg < 1:1070670‑M1/49‑24 (MQ=255) cTGAACAGCGATAAAAGATAAAGGTGaataagtcgtgcgcagatgcctg < 2:3953387‑M1/49‑24 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 2:2821751‑M1/1‑25 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 2:3605745‑M1/1‑25 (MQ=255) tGAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat > 1:3603071‑M1/1‑25 (MQ=255) gAACAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatg > 2:1512590‑M1/1‑24 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 2:5319135‑M1/1‑23 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc < 2:845909‑M1/50‑28 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:3113182‑M1/48‑26 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:5354448‑M1/48‑26 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 1:4839745‑M1/48‑26 (MQ=255) aaCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgat < 2:362621‑M1/48‑26 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcg < 2:5567294‑M1/50‑29 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcg < 1:4185462‑M1/50‑29 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 1:3477274‑M1/1‑22 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 2:2537407‑M1/1‑22 (MQ=255) aCAGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgc > 2:2409305‑M1/1‑22 (MQ=255) cAGCGATAATCGATAAAGGTGgataagtcgcgcgcagatgcctgatgcga > 2:4093556‑M1/1‑21 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac < 2:2342525‑M1/50‑31 (MQ=255) aGCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgac > 2:939379‑M1/1‑20 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 2:3511388‑M1/50‑32 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg < 1:2498439‑M1/50‑32 (MQ=255) gCGATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacg > 1:1538586‑M1/1‑19 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgct < 2:1141770‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgcg < 2:3384078‑M1/50‑34 (MQ=255) gATAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgc > 1:4349816‑M1/1‑17 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 2:5181450‑M1/1‑15 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:2257592‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat < 1:5692530‑M1/50‑36 (MQ=255) tAAAAGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctat > 2:2004230‑M1/1‑15 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:4614510‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:1667506‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc < 1:5455755‑M1/50‑38 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 2:4782166‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgc > 1:2936225‑M1/1‑13 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 2:768689‑M1/49‑37 (MQ=255) aaaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatg < 2:4716079‑M1/49‑37 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 2:2275001‑M1/1‑12 (MQ=255) aaGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcg > 1:3729269‑M1/1‑12 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc > 2:1979716‑M1/1‑11 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc > 2:3974734‑M1/1‑11 (MQ=255) aGATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgc < 1:131680‑M1/50‑40 (MQ=255) gATAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcg > 2:2729482‑M1/1‑10 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt > 1:2790609‑M1/1‑9 (MQ=255) aTAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgt < 2:1185435‑M1/50‑42 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc < 2:4244025‑M1/50‑43 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:485031‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 2:78733‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 2:4562376‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 2:4710623‑M1/1‑8 (MQ=255) tAAAGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtc > 1:3003899‑M1/1‑8 (MQ=255) aaaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct > 2:3847660‑M1/1‑7 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:2608105‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctt < 1:2319706‑M1/50‑45 (MQ=255) aaGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtct < 2:2187438‑M1/49‑44 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 2:2784956‑M1/50‑46 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta < 1:3435574‑M1/50‑46 (MQ=255) aGGTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtctta > 2:1255329‑M1/1‑5 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat < 1:949758‑M1/50‑47 (MQ=255) ggTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttat < 1:2096424‑M1/50‑47 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 2:4441011‑M1/50‑48 (MQ=255) gTGgataagtcgtgcgcagatgcctgatgcgacgctatgcgcgtcttatc < 1:1466199‑M1/50‑48 (MQ=255) | GGAATCGACAGGTAATCACTCATACTGAACAGCGATAAAAGATAAAGGTGTGTTCATGAATTCATGTGATTTTCGTGTTTTTCTGCAAGAGTTCGGT > NC_000913/332316‑332412 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |