| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 114 [0] | [0] 114 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 111 (0.760) | 62/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 114 total aligned reads displayed.
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATT > NC_000913/3888382‑3888479 | aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:4546886‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 2:1987304‑M1/50‑1 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 2:4455245‑M1/1‑49 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:3690867‑M1/1‑49 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 2:1675862‑M1/50‑2 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 2:591042‑M1/50‑2 (MQ=255) aaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc < 1:5371819‑M1/50‑2 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcg < 1:2372074‑M1/50‑3 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:770034‑M1/1‑48 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 1:72452‑M1/1‑47 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 1:3201328‑M1/1‑47 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 1:949216‑M1/1‑47 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 2:1045586‑M1/1‑47 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac > 1:3133827‑M1/1‑46 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 2:1698032‑M1/1‑45 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact > 2:3899076‑M1/1‑45 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:4347684‑M1/1‑44 (MQ=255) ctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 2:1998238‑M1/1‑43 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca > 2:2747084‑M1/1‑42 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca > 1:3270793‑M1/1‑42 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca > 2:3074802‑M1/1‑42 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 2:3166744‑M1/48‑7 (MQ=255) tGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt < 1:5208818‑M1/48‑7 (MQ=255) gAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac > 2:587884‑M1/1‑41 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcac < 2:2875401‑M1/49‑10 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttc < 1:1976623‑M1/47‑8 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttc < 1:180775‑M1/47‑8 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 1:1519774‑M1/50‑12 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:5505224‑M1/1‑38 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:5602708‑M1/1‑38 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:1607330‑M1/1‑37 (MQ=255) gtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag > 1:5230717‑M1/1‑37 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 1:4133825‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 2:5471856‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta < 1:1375506‑M1/50‑15 (MQ=255) aataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat > 2:172628‑M1/1‑35 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 2:301464‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt < 1:2332017‑M1/50‑17 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 2:2474143‑M1/49‑16 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtat < 1:238170‑M1/49‑16 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc < 1:5370661‑M1/50‑18 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc > 2:3888217‑M1/1‑33 (MQ=255) taatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattc < 1:3647924‑M1/50‑18 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc > 1:294116‑M1/1‑31 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 1:2115727‑M1/49‑19 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 2:5060654‑M1/49‑19 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 2:4176595‑M1/1‑29 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:2657502‑M1/1‑29 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctgg > 2:4168602‑M1/1‑28 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg < 1:5479972‑M1/49‑22 (MQ=255) tAGCCTCGTGTCTTGCGAGGATAAGTGCcacttcaccagtattctctgg < 2:4406890‑M1/49‑22 (MQ=255) aGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt > 1:3918326‑M1/1‑27 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:5420008‑M1/50‑25 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:5109711‑M1/50‑25 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 2:1738879‑M1/50‑25 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:3781399‑M1/50‑25 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggt < 2:2659572‑M1/49‑24 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta < 1:236147‑M1/50‑26 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat < 2:4212027‑M1/50‑27 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctcgggttat < 1:4455494‑M1/50‑27 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:1675975‑M1/1‑23 (MQ=255) tCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg > 1:4818049‑M1/1‑23 (MQ=255) cGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:3259929‑M1/1‑22 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:1715235‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:2746312‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:1606782‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:794530‑M1/1‑21 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg < 2:3252515‑M1/48‑28 (MQ=255) gtgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatg < 1:3337533‑M1/48‑28 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 2:16989‑M1/50‑31 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:2017096‑M1/50‑31 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 2:3155675‑M1/1‑20 (MQ=255) gtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcag > 1:2421370‑M1/1‑19 (MQ=255) ttGCGAGGATAAGTGTcgacttcaccagtattctctggttatgtcaggtt > 1:3905624‑M1/1‑16 (MQ=255) ttGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt > 2:85714‑M1/1‑16 (MQ=255) ttGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtt > 2:5077985‑M1/1‑16 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt < 2:4741908‑M1/49‑36 (MQ=255) cGAGGATAAGTGCcgacttcaccagtcttctctggttatgtcaggttt < 1:2652359‑M1/48‑36 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 1:4313623‑M1/49‑37 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttg < 2:3265148‑M1/49‑37 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc < 2:1496893‑M1/50‑39 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:5431494‑M1/1‑12 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:301025‑M1/1‑12 (MQ=255) aGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcc < 2:4203831‑M1/50‑40 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 1:2420781‑M1/50‑41 (MQ=255) ggATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcct < 1:2320596‑M1/50‑41 (MQ=255) aaGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg > 1:3336251‑M1/1‑6 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaa > 2:1949111‑M1/1‑5 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaa < 1:193315‑M1/50‑46 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcga < 2:881617‑M1/49‑45 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 2:3499730‑M1/50‑47 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat > 1:3913147‑M1/1‑4 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat < 1:1191254‑M1/50‑47 (MQ=255) gTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaat > 1:1112081‑M1/1‑4 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 2:4888355‑M1/1‑3 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 2:4430939‑M1/1‑3 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg < 1:5527135‑M1/50‑48 (MQ=255) gCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:540477‑M1/1‑2 (MQ=255) gCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:4639746‑M1/1‑2 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgc < 2:813511‑M1/49‑49 (MQ=255) | AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATT > NC_000913/3888382‑3888479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |