| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2066304 | NA (NA) | 173 (1.160) | 80/98 | 0.0 | 100% | noncoding (1050/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2080592 = | 0 (0.000) | intergenic (‑1/+197) | yeeA/sbmC | putative transporter YeeA/DNA gyrase inhibitor | |||||
Only 100 of 176 total aligned reads displayed.
GGCGGTATACCCGGATTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > NC_000913/2080543‑2080640 | cagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttg > 2:4118429‑M2/50‑50 (MQ=255) agcctatttagaccgtttcttcgccatttaaggcgttatccccagtttg < 1:1084618‑M2/1‑1 (MQ=255) agcctatttagaccgtttcttcgccatttaaggcgttatccccagtttg < 1:5584376‑M2/1‑1 (MQ=255) agcctatttagaccgtttcttcgccatttaaggcgttatccccagtttGc < 1:3317855‑M2/2‑1 (MQ=255) agcctatttagaccgtttcttcgccatttaaggcgttatccccagtttGc < 1:5566146‑M2/2‑1 (MQ=255) agcctatttagaccgtttcttcgccatttaaggcgttatccccagtttGc < 1:3097501‑M2/2‑1 (MQ=255) gcctatttagaccgtttcttcgccatttaaggcgttatccccagtttg > 2:3270621‑M2/48‑48 (MQ=255) cctatttagaccgtttcttcgccatttaaggcgttatccccagtttg > 1:65261‑M2/47‑47 (MQ=255) tatttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGa > 1:1418843‑M2/45‑49 (MQ=255) atttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGaaa > 1:305951‑M2/44‑50 (MQ=255) tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGaa < 2:1324413‑M2/6‑1 (MQ=255) tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGaa < 2:5677697‑M2/6‑1 (MQ=255) tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAAc > 2:5353293‑M2/43‑50 (MQ=255) tttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAAc > 2:3193248‑M2/43‑50 (MQ=255) ttagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACt > 2:1202582‑M2/42‑50 (MQ=255) tagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACt < 2:1928694‑M2/9‑1 (MQ=255) tagaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTc > 2:4495231‑M2/41‑50 (MQ=255) agaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTcc > 2:426492‑M2/40‑50 (MQ=255) gaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTcc < 2:3058501‑M2/11‑1 (MQ=255) gaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTcc < 1:2318396‑M2/11‑1 (MQ=255) gaccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCg < 1:1908148‑M2/12‑1 (MQ=255) accgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCg > 2:5295672‑M2/38‑49 (MQ=255) accgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGt < 2:4671302‑M2/13‑1 (MQ=255) accgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGt < 1:1536036‑M2/13‑1 (MQ=255) ccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGt > 2:164134‑M2/37‑49 (MQ=255) ccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTa < 2:4961114‑M2/14‑1 (MQ=255) ccgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTa < 1:2565881‑M2/14‑1 (MQ=255) cgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTaa < 2:3971079‑M2/15‑1 (MQ=255) cgtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTaa < 2:3968603‑M2/15‑1 (MQ=255) gtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt < 1:3267201‑M2/16‑1 (MQ=255) gtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 1:753312‑M2/35‑50 (MQ=255) gtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt < 1:5476027‑M2/16‑1 (MQ=255) gtttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 1:5628595‑M2/35‑50 (MQ=255) tttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATg < 2:5245680‑M2/17‑1 (MQ=255) tttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATg < 1:941907‑M2/17‑1 (MQ=255) ttcttcgccatttaaggcgttatccccagtttGCAGAATCTCCGTAAt > 2:3397332‑M2/33‑48 (MQ=255) ttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 1:4997219‑M2/33‑48 (MQ=255) ttcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 1:4337033‑M2/33‑48 (MQ=255) tcttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 2:2652268‑M2/32‑47 (MQ=255) cttcgccatttaaggcgttatccccagtttGCAGAAACTCCGTAAt > 2:5478473‑M2/31‑46 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATgaga < 1:2830058‑M2/20‑1 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAtt > 2:2273818‑M2/28‑49 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAtt > 2:3631073‑M2/28‑49 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAtt < 2:3677002‑M2/22‑1 (MQ=255) cgccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGAt < 1:840143‑M2/21‑1 (MQ=255) gccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa < 1:5235059‑M2/24‑1 (MQ=255) gccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa < 1:1864948‑M2/24‑1 (MQ=255) ccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaaa < 2:2703669‑M2/25‑1 (MQ=255) ccatttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa > 2:2552660‑M2/26‑49 (MQ=255) catttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTaa > 2:5093411‑M2/25‑48 (MQ=255) atttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAg > 1:179141‑M2/24‑50 (MQ=255) atttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAg > 1:2016625‑M2/24‑50 (MQ=255) tttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc < 2:2037289‑M2/28‑1 (MQ=255) tttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgc < 2:2333711‑M2/28‑1 (MQ=255) ttaaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgcg > 2:1108431‑M2/22‑50 (MQ=255) taaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgcg < 1:3869214‑M2/29‑1 (MQ=255) taaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgcg < 2:5185879‑M2/29‑1 (MQ=255) aaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAgcgc < 2:3543068‑M2/30‑1 (MQ=255) aaggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt > 1:4129873‑M2/20‑50 (MQ=255) aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt < 2:4856722‑M2/31‑1 (MQ=255) aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt > 2:362450‑M2/19‑49 (MQ=255) aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt < 2:3346948‑M2/31‑1 (MQ=255) aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCt > 2:3013761‑M2/19‑49 (MQ=255) aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTc < 2:1757426‑M2/32‑1 (MQ=255) aggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTc < 1:5587295‑M2/32‑1 (MQ=255) ggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa > 1:3656272‑M2/18‑50 (MQ=255) ggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa < 1:4749479‑M2/33‑1 (MQ=255) ggcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa > 2:1473190‑M2/18‑50 (MQ=255) gcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa > 1:1694226‑M2/17‑49 (MQ=255) gcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCa > 2:1125115‑M2/17‑49 (MQ=255) gcgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt < 2:632464‑M2/34‑1 (MQ=255) cgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt > 2:3375048‑M2/16‑49 (MQ=255) cgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCAt > 2:5191782‑M2/16‑49 (MQ=255) cgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATa < 1:3817172‑M2/35‑1 (MQ=255) cgttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATa < 1:4511612‑M2/35‑1 (MQ=255) gttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATaa > 1:1735403‑M2/15‑50 (MQ=255) ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc > 1:1144960‑M2/14‑50 (MQ=255) ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc < 1:4280265‑M2/37‑1 (MQ=255) ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc < 1:3160523‑M2/37‑1 (MQ=255) ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc < 1:5250296‑M2/37‑1 (MQ=255) ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc > 1:4859215‑M2/14‑50 (MQ=255) ttatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAAc > 2:4607914‑M2/14‑50 (MQ=255) tatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt > 1:2237031‑M2/13‑50 (MQ=255) tatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt > 2:4896603‑M2/13‑50 (MQ=255) tatccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt > 2:1857615‑M2/13‑50 (MQ=255) atccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACt > 1:1080703‑M2/12‑49 (MQ=255) tccccagtttGCATAAACTCCGTAATGAGATTAAAAGCGCTCATAACTc < 2:1675963‑M2/39‑1 (MQ=255) tccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTc < 1:4279141‑M2/39‑1 (MQ=255) ccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCAt > 1:3944295‑M2/10‑50 (MQ=255) ccccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCAt > 1:745144‑M2/10‑50 (MQ=255) cccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCAt < 1:976270‑M2/41‑1 (MQ=255) ccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCt < 1:216345‑M2/43‑1 (MQ=255) ccagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCt > 2:5686899‑M2/8‑50 (MQ=255) cagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTg < 1:2469637‑M2/44‑1 (MQ=255) cagtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTg > 1:4223185‑M2/7‑50 (MQ=255) gtttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTc > 2:4483597‑M2/5‑50 (MQ=255) tttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCg < 1:3994229‑M2/47‑1 (MQ=255) tttGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCg < 1:4767855‑M2/47‑1 (MQ=255) gcaGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGc < 2:3886408/49‑1 (MQ=255) gcaGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGc > 2:2131370/1‑49 (MQ=255) | GGCGGTATACCCGGATTTCAAACGGGCTTAATGACTTATCGGCACGCACGCAGAAACTCCGTAATGAGATTAAAAGCGCTCATAACTCATCTGTCGGC > NC_000913/2080543‑2080640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |