| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 186 [0] | [0] 182 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 178 (1.220) | 83/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 182 total aligned reads displayed.
TAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770195‑3770291 | acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTc < 1:510081‑M2/2‑1 (MQ=255) cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCa < 1:319378‑M2/3‑1 (MQ=255) gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa > 2:3718031‑M2/47‑50 (MQ=255) gagtttcataccgagtcctttgtgcgaggaaaaatatctgtatggcTCaa > 1:4546449‑M2/47‑50 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt < 2:2938928‑M2/5‑1 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:5225586‑M2/46‑50 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt < 2:4751177‑M2/5‑1 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:3400033‑M2/45‑49 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:3469021‑M2/45‑49 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg < 2:3763708‑M2/6‑1 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg < 1:3594014‑M2/6‑1 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 2:2383121‑M2/7‑1 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 2:4386831‑M2/7‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:4050386‑M2/8‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 2:1145587‑M2/8‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:547348‑M2/8‑1 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 2:1617127‑M2/41‑49 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc < 1:2474617‑M2/9‑1 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc < 2:5019264‑M2/9‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc > 2:3124111‑M2/40‑49 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:2865830‑M2/11‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:1966015‑M2/11‑1 (MQ=255) tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa > 2:597479‑M2/39‑49 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa > 1:4407163‑M2/37‑49 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt > 1:667316‑M2/36‑49 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa < 1:414253‑M2/15‑1 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa < 2:434548‑M2/15‑1 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa < 2:5510664‑M2/16‑1 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa < 2:2491559‑M2/17‑1 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:5368098‑M2/18‑1 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 2:2247549‑M2/31‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt > 2:4553445‑M2/30‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt > 2:3504655‑M2/30‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt < 1:2166048‑M2/20‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 2:1371512‑M2/21‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 2:1168376‑M2/21‑1 (MQ=255) tttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa > 1:102721‑M2/29‑50 (MQ=255) ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt > 1:2890567‑M2/28‑50 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 2:2672891‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt < 2:5563629‑M2/23‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 2:5479858‑M2/27‑50 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 1:1791464‑M2/27‑50 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 2:4680662‑M2/26‑49 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 2:3930754‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:4084261‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:5654684‑M2/25‑1 (MQ=255) gcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt > 1:1344375‑M2/24‑50 (MQ=255) gcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt > 2:4775989‑M2/24‑50 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAGGATAATGCAt < 1:424778‑M2/27‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:9741‑M2/23‑50 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:2080995‑M2/23‑50 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc < 1:1580961‑M2/29‑1 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 2:437032‑M2/22‑49 (MQ=255) gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:5606389‑M2/22‑49 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 2:5077938‑M2/30‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 2:2233187‑M2/30‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAACTAAAGATAATGCATCCAGc > 2:5303046‑M2/19‑50 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc > 2:1002414‑M2/19‑50 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 2:2894479‑M2/32‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc > 2:1946530‑M2/19‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 2:4741720‑M2/18‑50 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 2:3863610‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg > 2:5540743‑M2/17‑50 (MQ=255) aaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg > 2:4964377‑M2/16‑50 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 2:5643845‑M2/15‑50 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:2428135‑M2/14‑49 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 2:5230583‑M2/14‑49 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:1847707‑M2/14‑49 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:4875303‑M2/37‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:3105393‑M2/37‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 2:1534105‑M2/37‑1 (MQ=255) tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa > 1:4164593‑M2/13‑50 (MQ=255) tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa > 1:4298656‑M2/13‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt > 1:1873655‑M2/11‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt > 1:2217464‑M2/11‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt < 2:1682858‑M2/39‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt < 1:1786803‑M2/39‑1 (MQ=255) cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc > 2:701562‑M2/10‑50 (MQ=255) cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc > 1:4605742‑M2/10‑50 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc < 2:4035627‑M2/41‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 2:465068‑M2/9‑50 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:1042941‑M2/9‑50 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:3161049‑M2/9‑50 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:5206152‑M2/7‑48 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa < 2:2017676‑M2/44‑1 (MQ=255) atggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:4829952‑M2/6‑50 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc < 2:1734328‑M2/46‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc < 1:3862765‑M2/46‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 2:142260‑M2/5‑49 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag < 1:2646693‑M2/45‑1 (MQ=255) ggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:3261315‑M2/4‑48 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 2:3369777‑M2/48‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:602762‑M2/3‑50 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 2:366950‑M2/47‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:1432566‑M2/47‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 2:4294546‑M2/47‑1 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc < 1:3635191‑M2/49‑1 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:5431754‑M2/2‑49 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 2:1331298‑M2/2‑49 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 2:775452‑M2/2‑49 (MQ=255) | TAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770195‑3770291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |