| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,040,502 | Δ73,763 bp | [appX]–[mdtG] | 75 genes [appX], appA, etk, etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA‑4, insB‑4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeU, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF‑4, insE‑4, ymdE, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, [mdtG] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1040502 | 1114264 | 73763 | 175 [0] | [0] 172 | [appX]–[mdtG] | [appX],appA,etk,etp,gfcE,gfcD,gfcC,gfcB,gfcA,insA‑4,insB‑4,cspH,cspG,ymcF,ymcE,gnsA,yccM,torS,torT,torR,torC,torA,torD,cbpM,cbpA,yccE,agp,yccJ,wrbA,ymdF,rutG,rutF,rutE,rutD,rutC,rutB,rutA,rutR,putA,ymdG,putP,efeU,efeO,efeB,phoH,pgaD,pgaC,pgaB,pgaA,dgcT,insF‑4,insE‑4,ymdE,ycdU,serX,ghrA,ycdX,ycdY,ycdZ,csgG,csgF,csgE,csgD,csgB,csgA,csgC,ymdA,ymdB,clsC,opgC,opgG,opgH,yceK,msyB,[mdtG] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1040501 | 0 (0.000) | 165 (1.130) | 70/96 | 0.0 | 100% | coding (57/93 nt) | appX | small protein AppX |
| ? | NC_000913 | 1114265 = | 0 (0.000) | coding (1226/1227 nt) | mdtG | efflux pump MdtG | |||||
Only 100 of 175 total aligned reads displayed.
ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040452‑1040549 | tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTc < 2:5081796‑M1/50‑2 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTc < 2:3934078‑M1/50‑2 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 2:677301‑M1/1‑49 (MQ=255) tttACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT < 1:870306‑M1/49‑1 (MQ=255) tttACTTTGGATCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTT > 1:5330313‑M1/1‑49 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:5655460‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcag > 1:3621551‑M1/1‑47 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 2:1688449‑M1/49‑3 (MQ=255) tACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTca < 2:175343‑M1/49‑3 (MQ=255) aCTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagt > 2:1047171‑M1/1‑46 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 1:1112963‑M1/1‑45 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt > 2:1728652‑M1/1‑45 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagtt < 2:557762‑M1/50‑6 (MQ=255) cTTTGGTTCGTCGGCATTTTGTTGACGTGTTCGCTCTCCACCCTTcagtt < 2:1215976‑M1/50‑6 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcg < 2:3492119‑M1/49‑8 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 1:4982204‑M1/48‑7 (MQ=255) tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttc < 2:451042‑M1/48‑7 (MQ=255) ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcga > 2:2905141‑M1/1‑41 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgata < 1:4891451‑M1/50‑11 (MQ=255) gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgata < 1:2105887‑M1/50‑11 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac < 2:5002085‑M1/50‑12 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac < 1:2030357‑M1/50‑12 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac < 1:90584‑M1/50‑12 (MQ=255) ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatac < 2:5672635‑M1/50‑12 (MQ=255) tcgtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacc > 2:2363852‑M1/1‑38 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg > 1:3764551‑M1/1‑36 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctg > 1:4348832‑M1/1‑36 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct < 2:95203‑M1/49‑14 (MQ=255) gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacct < 2:4552270‑M1/49‑14 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:2861647‑M1/1‑33 (MQ=255) ggCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggg < 1:5476121‑M1/49‑17 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 2:1619151‑M1/1‑32 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:3086269‑M1/1‑32 (MQ=255) gCATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctgggg > 1:3993059‑M1/1‑32 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta < 1:3438990‑M1/50‑20 (MQ=255) cATTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggta > 2:3144585‑M1/1‑31 (MQ=255) aTTTTGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtat > 1:4112114‑M1/1‑30 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt > 1:3444311‑M1/1‑29 (MQ=255) ttttGTTGATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtatt < 2:2579127‑M1/50‑22 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 1:3945173‑M1/49‑23 (MQ=255) ttgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattc < 2:4297064‑M1/49‑23 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga > 1:4722125‑M1/1‑26 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 1:612204‑M1/49‑24 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 1:3644169‑M1/49‑24 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 1:3539215‑M1/49‑24 (MQ=255) tgttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcg < 2:597730‑M1/49‑24 (MQ=255) gttgCTGTGTTCGCTCTCCACCCTTcagttcgatacctgggggattcgac > 2:2319451‑M1/1‑25 (MQ=255) gttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcga < 2:5635004‑M1/49‑25 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 1:680818‑M1/50‑27 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 2:3977342‑M1/50‑27 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacg < 2:2737924‑M1/50‑27 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac < 1:3954871‑M1/49‑26 (MQ=255) ttgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgac < 1:5489446‑M1/49‑26 (MQ=255) tgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga > 1:4236071‑M1/1‑23 (MQ=255) tgATGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacga > 1:1026366‑M1/1‑23 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacg < 2:1250927‑M1/50‑30 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacg < 1:2612812‑M1/50‑30 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacg < 2:2487723‑M1/50‑30 (MQ=255) aTGTGTTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgac < 1:4240351‑M1/49‑29 (MQ=255) gtgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgccgac > 2:1952945‑M1/1‑19 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 2:1141820‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:321776‑M1/49‑32 (MQ=255) tgtTCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgac < 1:3002065‑M1/49‑32 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgta < 1:1338407‑M1/50‑35 (MQ=255) ttCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgta < 2:490539‑M1/50‑35 (MQ=255) tCGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacg > 2:4157972‑M1/1‑15 (MQ=255) cGCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtaga > 1:4970053‑M1/1‑14 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 2:3774272‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 2:916421‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 1:695623‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 2:2566961‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 2:2427025‑M1/1‑13 (MQ=255) gCTCTCCACCCTTcagttcgatacctggggtattcgacgacgacgtagac > 2:2453399‑M1/1‑13 (MQ=255) ctctCCACCCTTcagttcgatacctggggtattcgacgacgacgtagact < 2:14445‑M1/50‑39 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:2500720‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 2:176664‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 2:67842‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 2:109935‑M1/1‑11 (MQ=255) tctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactg > 1:2449297‑M1/1‑11 (MQ=255) ctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt > 2:3750545‑M1/1‑10 (MQ=255) ctcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt > 1:3922322‑M1/1‑10 (MQ=255) tcCACCTTTcagttcgatacctggggaattcgacgacgaagtagactgtt > 2:4540336‑M1/1‑9 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 1:3000075‑M1/1‑9 (MQ=255) tcCACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt > 2:649467‑M1/1‑9 (MQ=255) ccACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 2:1569282‑M1/1‑8 (MQ=255) ccACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc > 1:1718978‑M1/1‑8 (MQ=255) cccccttcagttcgatacctggggtattcgacgacgacgtagactgttcc < 2:2664566‑M1/48‑44 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgttc < 2:444097‑M1/49‑43 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt < 2:4584485‑M1/48‑42 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgtt < 2:2880748‑M1/48‑42 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt < 2:2432206‑M1/47‑41 (MQ=255) cACCCTTcagttcgatacctggggtattcgacgacgacgtagactgt < 1:1927234‑M1/47‑41 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca > 1:4474633‑M1/1‑6 (MQ=255) aCCCTTcagttcgatacctggggtattcgacgacgacgtagactgttcca < 1:4367736‑M1/50‑45 (MQ=255) cccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat < 1:5362702‑M1/50‑46 (MQ=255) cccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat > 2:4721669‑M1/1‑5 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccatg < 1:1958086‑M1/50‑47 (MQ=255) ccTTcagttcgatacctggggtattcgacgacgacgtagactgttccat > 1:3607637‑M1/1‑4 (MQ=255) ttcagttcgatacctggggtattcgacgacgacgtagactgttccatgaa > 1:479601‑M1/1‑2 (MQ=255) tcagttcgatacctggggtattcgacgacgacgtagactgttccatgaa > 1:936445‑M1/1‑1 (MQ=255) | ATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCC > NC_000913/1040452‑1040549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |