| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 136 [0] | [0] 140 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 135 (0.900) | 68/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 136 total aligned reads displayed.
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 | aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg < 1:54827/49‑1 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 2:3763731‑M1/1‑49 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:13522‑M1/1‑49 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:1840752‑M1/1‑49 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 2:4126517‑M1/1‑49 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt < 2:5426610‑M1/49‑2 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc > 1:4091423‑M1/1‑47 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:1543061‑M1/50‑4 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 2:2309682‑M1/50‑4 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg > 2:5116190‑M1/1‑46 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc < 1:5251586‑M1/50‑6 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:5255652‑M1/1‑44 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct > 1:1369666‑M1/1‑44 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:2403561‑M1/1‑43 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 2:2917206‑M1/1‑42 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt < 2:3871527‑M1/49‑9 (MQ=255) tGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttt < 1:4509619‑M1/49‑9 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta > 1:4268045‑M1/1‑40 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:4043494‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:708530‑M1/49‑11 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:5651830‑M1/49‑11 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 2:4351719‑M1/1‑38 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:5213490‑M1/1‑36 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca < 1:191909‑M1/50‑15 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 2:5082887‑M1/1‑35 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:2662642‑M1/1‑35 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:3384414‑M1/50‑18 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 2:5666877‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 2:4808309‑M1/50‑18 (MQ=255) gACGGTGTAACAATGCATTCCTGCCTGCAGTGttcgctttaaaacatatc < 1:5328035‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:2983735‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:4615403‑M1/1‑32 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:1950231‑M1/1‑32 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:810281‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 2:1139656‑M1/1‑31 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:2979884‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 2:432008‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:5139335‑M1/50‑21 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:1952834‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 2:1693342‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:4955911‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:5404219‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:5549217‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:2210061‑M1/50‑23 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:2639444‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 1:1682715‑M1/1‑27 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga > 1:5067885‑M1/1‑27 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 2:2247675‑M1/1‑26 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 2:2619222‑M1/1‑26 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 1:595167‑M1/1‑26 (MQ=255) gtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa > 2:2404030‑M1/1‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatgtcatgaaa < 1:3299306‑M1/49‑25 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:2640335‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:4284490‑M1/49‑27 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 2:752467‑M1/1‑22 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 2:3817792‑M1/50‑29 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg < 1:1102747‑M1/50‑29 (MQ=255) cAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgg > 1:2881704‑M1/1‑22 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:4623163‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 2:2128997‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatataatgaaactggg > 2:4956895‑M1/1‑21 (MQ=255) aTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 2:823088‑M1/1‑20 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 2:5310267‑M1/50‑32 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta > 1:827885‑M1/1‑19 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 2:1261782‑M1/49‑33 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 2:898767‑M1/50‑35 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 2:2008907‑M1/1‑16 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt > 2:1377744‑M1/1‑15 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt < 1:4669026‑M1/50‑36 (MQ=255) ccGGCCTGCAGGGttcgctttaaaacatatcatgaaactgggtatgttt < 2:3469568‑M1/49‑37 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 2:1059542‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:3336074‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 2:4584983‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:3651485‑M1/49‑38 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:5441994‑M1/49‑38 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 2:1461794‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 2:1392736‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt < 2:231493‑M1/50‑40 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc < 1:3528422‑M1/50‑41 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc < 2:4676309‑M1/50‑41 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 2:1805118‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:3876386‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactggggatgttttgtct > 1:5013972‑M1/1‑9 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:5463155‑M1/1‑7 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 2:3804054‑M1/1‑5 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 2:701364‑M1/1‑5 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 2:2671268‑M1/1‑5 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 2:4416369‑M1/1‑4 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 2:4847243‑M1/1‑4 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 2:2576988‑M1/50‑47 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 1:1366223‑M1/50‑47 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 1:1146325‑M1/50‑47 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 2:3319905‑M1/50‑47 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 1:4913108‑M1/50‑47 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc < 1:1010378‑M1/50‑48 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 2:2354091‑M1/1‑2 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 2:4662222‑M1/1‑1 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 2:1830431‑M1/1‑1 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 2:552305‑M1/1‑1 (MQ=255) gttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgctc > 2:3028552‑M1/1‑1 (MQ=255) | AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |