| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 199 [0] | [0] 203 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 190 (1.300) | 85/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 199 total aligned reads displayed.
CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTAC > NC_000913/1627469‑1627566 | cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 2:2188701‑M1/50‑2 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 2:2136448‑M1/1‑48 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:3666851‑M1/1‑48 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag < 2:2936065‑M1/50‑3 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 2:1368432‑M1/50‑4 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc > 1:3892608‑M1/1‑47 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAATAGTGAGAagcg > 2:3502961‑M1/1‑46 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 2:51896‑M1/1‑46 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 2:269096‑M1/1‑46 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgc < 2:3850322‑M1/50‑6 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 2:2626221‑M1/1‑45 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgca < 1:4626094‑M1/50‑7 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 2:3904020‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 2:2351838‑M1/1‑43 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 2:239981‑M1/1‑42 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 2:5563003‑M1/1‑42 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:1306230‑M1/1‑42 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 2:3335488‑M1/1‑41 (MQ=255) cTATGTTATTGACCCACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc < 1:5279721‑M1/50‑11 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:5595897‑M1/1‑40 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:2621433‑M1/1‑39 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:1864992‑M1/1‑39 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:1244608‑M1/1‑38 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 2:4722474‑M1/1‑38 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccc < 1:317159‑M1/49‑13 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:3051202‑M1/1‑37 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:4925342‑M1/1‑37 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 2:2972756‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 2:3971925‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 2:3063674‑M1/49‑17 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 2:3295412‑M1/1‑32 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat < 1:1621552‑M1/50‑19 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca < 1:4459133‑M1/49‑18 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 2:495019‑M1/49‑20 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:2379391‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:2855529‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 2:1224292‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:3408076‑M1/1‑29 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcc < 1:2834810‑M1/49‑21 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 2:5340176‑M1/1‑28 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 2:1089238‑M1/1‑27 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:4178929‑M1/1‑27 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgat < 1:4787914‑M1/50‑25 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgat < 1:3989485‑M1/50‑25 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgat < 1:1924508‑M1/50‑25 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgat < 2:2521709‑M1/50‑25 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 2:638058‑M1/1‑26 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac < 1:5011529‑M1/50‑27 (MQ=255) aaaaGCGTTGAGGAACAGTGCGAagcgcagtgcccagccatcccgatact > 2:3478029‑M1/1‑23 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:2136616‑M1/50‑28 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 2:2425396‑M1/50‑28 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg > 1:2816831‑M1/1‑22 (MQ=255) aaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactg < 1:3098988‑M1/50‑29 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 2:2016467‑M1/1‑21 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 2:562507‑M1/1‑21 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 2:1519731‑M1/50‑31 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:4286617‑M1/50‑32 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 2:5006094‑M1/50‑32 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:4980063‑M1/1‑18 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 2:453090‑M1/1‑18 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc < 2:1645527‑M1/50‑33 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:5371225‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:4117129‑M1/1‑17 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt > 1:3222135‑M1/1‑16 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 2:5237018‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 2:1286487‑M1/1‑15 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 2:2720861‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1492046‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 2:3226945‑M1/50‑38 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:3393685‑M1/1‑12 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:2791106‑M1/50‑39 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:2467753‑M1/50‑39 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 2:4801098‑M1/1‑12 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc < 2:863447‑M1/50‑40 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 2:4361775‑M1/1‑11 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:1185356‑M1/1‑11 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 2:74853‑M1/1‑10 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 1:2676408‑M1/1‑10 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:1771618‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:3271170‑M1/1‑9 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa < 1:1023686‑M1/50‑43 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa > 2:1154074‑M1/1‑8 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 2:5132842‑M1/1‑7 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:4701412‑M1/50‑45 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:784665‑M1/50‑45 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 2:591695‑M1/50‑45 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:2647476‑M1/50‑45 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc < 1:4361921‑M1/50‑46 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc > 1:4262231‑M1/1‑5 (MQ=255) gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:2218993‑M1/1‑4 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 2:2271738‑M1/49‑47 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:4226393‑M1/1‑2 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 2:1841131‑M1/1‑2 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag > 2:342226‑M1/1‑1 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 2:3530552‑M1/50‑50 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 2:5678891‑M1/50‑50 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 2:5448926‑M1/50‑50 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 2:5314051‑M1/50‑50 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 1:2702304‑M1/50‑50 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag > 1:3949991‑M1/1‑1 (MQ=255) | CATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTAC > NC_000913/1627469‑1627566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |