BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	175 [0]	[0] 172	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	169 (1.130)	71/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	169 (1.130)	71/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 175 total aligned reads displayed.

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720584‑3720682

cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   >  2:1088868/1‑49 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                >  2:5088171‑M1/1‑47 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  2:1033055/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  1:4692283/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  2:1595531‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  2:623694‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  1:3570148‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  1:3069898‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                <  1:5067777‑M1/49‑4 (MQ=255)

    atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              >  1:745932‑M1/1‑45 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  2:86925‑M1/1‑44 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             <  1:5218945‑M1/50‑7 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             <  1:3939471‑M1/50‑7 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             <  2:4012691‑M1/50‑7 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              <  1:4860215‑M1/49‑6 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:2299101‑M1/1‑42 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg                                            <  2:4121632‑M1/49‑8 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  2:4214792‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  2:2834045‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:789268‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:2188949‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  2:4569298‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:2825883‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattt                                        <  2:2486447‑M1/48‑12 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatt                                         <  1:4197684‑M1/47‑11 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  2:462323‑M1/50‑14 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  2:3513014‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:676371‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:5397921‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:2688669‑M1/1‑36 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:833893‑M1/1‑36 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  1:4132322‑M1/1‑35 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  2:1335279‑M1/1‑35 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:3238159‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:3715594‑M1/50‑16 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  2:2649633‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  2:4258879‑M1/49‑18 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                >  2:3434244‑M1/1‑31 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                >  2:4618066‑M1/1‑31 (MQ=255)

                    cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               >  1:5106131‑M1/1‑30 (MQ=255)

                    cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               <  2:3628257‑M1/50‑21 (MQ=255)

                    cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               <  2:5522845‑M1/50‑21 (MQ=255)

                    cAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcagg                               <  1:973160‑M1/50‑21 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              >  1:343586‑M1/1‑29 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              >  1:343161‑M1/1‑29 (MQ=255)

                      gCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtg                             >  1:4000304‑M1/1‑28 (MQ=255)

                      gCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtg                             <  2:5624167‑M1/50‑23 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:4640765‑M1/1‑26 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           >  1:2941107‑M1/1‑26 (MQ=255)

                          cctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggc                         >  2:4889970‑M1/1‑24 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        <  1:808408‑M1/50‑28 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        >  1:3794034‑M1/1‑23 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggc                         <  2:3106796‑M1/49‑27 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          <  1:4302725‑M1/48‑26 (MQ=255)

                             gtgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                      >  2:3081292‑M1/1‑21 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctttt                     <  2:903443‑M1/50‑31 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctt                       <  1:1599817‑M1/48‑29 (MQ=255)

                                ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                   <  2:1366812‑M1/50‑33 (MQ=255)

                                ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                   <  2:4990583‑M1/50‑33 (MQ=255)

                                ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttc                    <  2:3950125‑M1/49‑32 (MQ=255)

                                 tGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  >  1:2432737‑M1/1‑17 (MQ=255)

                                 tGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  >  2:2505254‑M1/1‑17 (MQ=255)

                                 tGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  >  2:5499308‑M1/1‑17 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctctg                <  2:547206‑M1/50‑36 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  2:417628‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:2963538‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:4449485‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:2022041‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  2:1339927‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  2:2230116‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:1027104‑M1/49‑35 (MQ=255)

                                    tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               >  1:5029070‑M1/1‑14 (MQ=255)

                                    tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               <  1:1541521‑M1/50‑37 (MQ=255)

                                    tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               >  2:453802‑M1/1‑14 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            >  2:4910544‑M1/1‑11 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtct             <  2:4649557‑M1/49‑39 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtct             <  2:1862676‑M1/49‑39 (MQ=255)

                                       ccAACGAGTATaactttgatttatagtcaggtggggcttttctctgtct             <  1:3778701‑M1/49‑39 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc           >  2:3977110‑M1/1‑10 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  2:5439704‑M1/49‑40 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  1:2875114‑M1/49‑40 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  1:4959260‑M1/49‑40 (MQ=255)

                                         aaCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcc          <  1:2189180‑M1/50‑42 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  2:275609‑M1/50‑44 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  1:1600659‑M1/50‑44 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  2:2579764‑M1/50‑44 (MQ=255)

                                           cGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcctt        <  1:1279254‑M1/50‑44 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       <  1:1815938‑M1/50‑45 (MQ=255)

                                            gAGTATaactttgatttatagtcaggtggggcttttctctgtctgccttt       <  2:4649692‑M1/50‑45 (MQ=255)

                                             cgtATaactttgatttatagtcaggtggggcctttctctgtctgcctttc      >  2:4324467‑M1/2‑5 (MQ=255)

                                             aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      <  1:5133498‑M1/50‑46 (MQ=255)

                                             aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      <  2:5218866‑M1/50‑46 (MQ=255)

                                             aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      <  2:2926207‑M1/50‑46 (MQ=255)

                                             aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      >  1:948668‑M1/1‑5 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     <  1:1026786‑M1/50‑47 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     <  2:3470416‑M1/50‑47 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:5187953‑M1/1‑3 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    <  2:1437193‑M1/50‑48 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:2312191‑M1/1‑2 (MQ=255)

                                                 taactttgatttatagtcaggtggggcttttctctgtctgcctttcggtg  <  2:771623‑M1/50‑50 (MQ=255)

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720584‑3720682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`