| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,299,628 | Δ25,538 bp | [mdtP]–[phnC] | 27 genes [mdtP], mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, [phnC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4299628 | 4325165 | 25538 | 149 [0] | [0] 146 | [mdtP]–[phnC] | [mdtP],mdtO,mdtN,ytcA,yjcS,alsK,alsE,alsC,alsA,alsB,alsR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,[phnC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4299627 | 0 (0.000) | 137 (0.920) | 72/98 | 0.0 | 100% | coding (1404/1467 nt) | mdtP | putative multidrug efflux pump outer membrane channel |
| ? | NC_000913 | 4325166 = | 0 (0.000) | intergenic (‑1/+132) | phnC/yjdN | phosphonate ABC transporter ATP binding subunit/conserved protein YjdN | |||||
Only 100 of 149 total aligned reads displayed.
CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299578‑4299676 | cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 2:1373746/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg < 2:709785/50‑1 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:133839/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:2585833/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 2:4450117/1‑50 (MQ=255)cgacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 1:4366130/1‑50 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 2:5643048/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 2:3577832/1‑49 (MQ=255) gacgGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATg > 2:4180069/1‑49 (MQ=255) aCGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGga > 2:3819011‑M1/1‑48 (MQ=255) cGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgat < 1:757531‑M1/50‑4 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:3671464‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:3382495‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg < 2:4024859‑M1/50‑5 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 1:4934119‑M1/1‑46 (MQ=255) gggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatg > 2:1888266‑M1/1‑46 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgc < 2:1958110‑M1/50‑6 (MQ=255) ggACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgc < 1:4159378‑M1/50‑6 (MQ=255) gACCTGCCTGATACCCGCCGCCCAGCGCTTTCATCCACTGAATGgttg > 1:1882272‑M1/1‑44 (MQ=255) cctgcctgATACCCGCCGCCCAGCGATTTCATGAACTGAATGgatgcagc < 1:5060060‑M1/50‑9 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc > 2:178116‑M1/1‑41 (MQ=255) ctgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcc < 1:3910975‑M1/50‑10 (MQ=255) tgcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct > 2:469253‑M1/1‑40 (MQ=255) gcctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctc > 1:3967395‑M1/1‑39 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 2:3295498‑M1/50‑13 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:2261932‑M1/50‑13 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcc < 1:1183876‑M1/50‑13 (MQ=255) cctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcct < 2:2391823‑M1/48‑11 (MQ=255) ctgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:4768638‑M1/1‑37 (MQ=255) tgATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccc > 1:2173402‑M1/1‑36 (MQ=255) gATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct > 2:2684509‑M1/1‑35 (MQ=255) gATACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct > 1:2542396‑M1/1‑35 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaa < 1:317575‑M1/50‑17 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcccta < 2:1123084‑M1/49‑16 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctcccta < 1:796862‑M1/49‑16 (MQ=255) aTACCCGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccct < 2:3554366‑M1/48‑15 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaa < 2:2506439‑M1/50‑20 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 2:3216371‑M1/49‑19 (MQ=255) cccGCCGCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaa < 1:1114592‑M1/49‑19 (MQ=255) ccgccgCCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaa < 1:4546987‑M1/50‑21 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag > 1:4413347‑M1/1‑29 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag > 2:5128163‑M1/1‑29 (MQ=255) cgccgcCCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaag > 2:5158995‑M1/1‑29 (MQ=255) gccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagt < 1:5551623‑M1/50‑23 (MQ=255) gccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagt > 1:3813372‑M1/1‑28 (MQ=255) ccgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtg > 2:3323618‑M1/1‑27 (MQ=255) cgccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtgg > 2:4736709‑M1/1‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc < 1:2627176‑M1/50‑26 (MQ=255) gccCAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggc < 2:1153524‑M1/50‑26 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct < 2:210349‑M1/50‑27 (MQ=255) cccAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggct > 2:5223316‑M1/1‑24 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc > 1:1293682‑M1/1‑22 (MQ=255) cAGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctc > 2:3432931‑M1/1‑22 (MQ=255) aGCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctcca < 2:157254‑M1/50‑30 (MQ=255) gCGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccat < 1:932899‑M1/50‑31 (MQ=255) gCGATTTAATCAACTGAATGgatgcagcctccctaacaaagtggctccat > 2:5505045‑M1/1‑20 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:4776645‑M1/1‑19 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:3635577‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:1217118‑M1/50‑32 (MQ=255) cGATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc < 1:2040522‑M1/50‑32 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 1:466915‑M1/1‑18 (MQ=255) gATTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcg > 2:5510742‑M1/1‑18 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt > 1:5555508‑M1/1‑17 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgt < 1:3142099‑M1/50‑34 (MQ=255) aTTTCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatc > 1:519025‑M1/1‑17 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg < 2:2131123‑M1/50‑35 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:4114869‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:1286791‑M1/1‑16 (MQ=255) tttCATCAACTGAATGgatgcagcctccctaaaaaagtggctccatcgtg > 1:3237632‑M1/1‑16 (MQ=255) tcatcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggc > 2:493942‑M1/1‑14 (MQ=255) atcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcg < 1:2786177‑M1/49‑38 (MQ=255) tcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcgga < 2:2743326‑M1/50‑40 (MQ=255) tcaACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcgga > 1:2788011‑M1/1‑11 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:2312511‑M1/1‑10 (MQ=255) caACTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 2:3739221‑M1/1‑10 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:3830182‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:156428‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggatt < 1:3600872‑M1/50‑42 (MQ=255) aaCTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggat > 1:3399338‑M1/1‑9 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:2525173‑M1/50‑44 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat > 2:3607402‑M1/1‑7 (MQ=255) cTGAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattat < 1:466639‑M1/50‑44 (MQ=255) gAATGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg > 1:3666729‑M1/1‑5 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt > 2:5617483‑M1/1‑4 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgt < 1:5408506‑M1/50‑47 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 2:953653‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattg < 1:2250251‑M1/49‑46 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 2:5019453‑M1/48‑45 (MQ=255) aaTGgatgcagcctccctaaaaaagtggctccatcgtggcggattatt < 1:4922286‑M1/48‑45 (MQ=255) aaTGgatgcagccgccctaaaaaggtgggtccttcgtggcggattattgt < 2:5199111‑M1/50‑47 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:1590332‑M1/50‑48 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 2:3211160‑M1/50‑48 (MQ=255) aTGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtg < 1:926576‑M1/50‑48 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga < 2:4539474‑M1/50‑49 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga < 2:3406899‑M1/50‑49 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga < 1:3103667‑M1/50‑49 (MQ=255) tGgatgcagcctccctaaaaaagtggctccatcgtggcggattattgtga < 2:1967763‑M1/50‑49 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 1:1379419‑M1/1‑1 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 2:3845375‑M1/1‑1 (MQ=255) ggatgcagcctccctaaaaaagtggctccatcgtggcggattattgtgac > 1:4290424‑M1/1‑1 (MQ=255) | CGACGGGACCTGCCTGATACCCGCCGCCCAGCGATTTCATCAACTGAATGCTTTGGATCACCCGGCGGCTGTCCAGCATCAGTAATGACATCTCTTCGG > NC_000913/4299578‑4299676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |