BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	257908	258683	776	168 [0]	[0] 166	insB9–[crl]	insB9,insA9,[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	143 (1.150)	61/82	0.0	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B
*	?	NC_000913	258684 =	0 (0.000)	143 (1.150)	61/82	0.0	100%	pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

Only 100 of 166 total aligned reads displayed.

AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC  >  NC_000913/258635‑258733

agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                   <  1:1850988‑M2/1‑1 (MQ=255)

agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                   <  1:4379628‑M2/1‑1 (MQ=255)

agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                   <  2:1489171‑M2/1‑1 (MQ=255)

agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa                                                   <  1:3102151‑M2/1‑1 (MQ=255)

 gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                  >  2:5644316‑M2/49‑50 (MQ=255)

 gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg                                                  >  1:3249989‑M2/49‑50 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 <  2:1358087‑M2/3‑1 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 <  1:1788926‑M2/3‑1 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 >  1:3599230‑M2/48‑50 (MQ=255)

  attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt                                                 >  2:2969228‑M2/48‑50 (MQ=255)

   ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg                                                <  1:4675954‑M2/4‑1 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               <  1:1160481‑M2/5‑1 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               >  1:855387‑M2/45‑49 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               >  2:243711‑M2/45‑49 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               <  2:282372‑M2/5‑1 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               <  2:2916836‑M2/5‑1 (MQ=255)

     gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc                                               <  1:2836604‑M2/5‑1 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                             <  2:2302120‑M2/7‑1 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                             <  1:3608021‑M2/7‑1 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                             <  2:5642983‑M2/7‑1 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaa                                             <  2:5161425‑M2/7‑1 (MQ=255)

      atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              <  1:455463‑M2/6‑1 (MQ=255)

       tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa                                            <  2:5053119‑M2/8‑1 (MQ=255)

       tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              >  2:4803468‑M2/43‑48 (MQ=255)

        caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              >  2:26760‑M2/42‑47 (MQ=255)

        caaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa                                              >  1:5149344‑M2/42‑47 (MQ=255)

         aaaaaattttccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg                                           <  2:5369950‑M2/9‑1 (MQ=255)

         aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg                                           <  2:1823303‑M2/9‑1 (MQ=255)

         aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg                                           <  1:3638336‑M2/9‑1 (MQ=255)

         aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa                                          <  1:5465873‑M2/10‑1 (MQ=255)

           caaatttaccgcactcggcccgtatattcgtgaaggtaAGTGCAAAGAt                                         >  2:4824071‑M2/39‑49 (MQ=255)

           aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa                                        <  1:1258296‑M2/12‑1 (MQ=255)

             aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      <  2:3707469‑M2/14‑1 (MQ=255)

             aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                      <  1:3323579‑M2/14‑1 (MQ=255)

              atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                     <  2:906916‑M2/15‑1 (MQ=255)

               tttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCg                                    <  1:2994043‑M2/16‑1 (MQ=255)

                ttaccgcactaggcccgtatattcgtgaaggtaAGTTCAAAGATAATCGa                                   >  2:2166712‑M2/34‑50 (MQ=255)

                  accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAtt                                 >  1:741150‑M2/32‑50 (MQ=255)

                  accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                  <  1:5382996‑M2/18‑1 (MQ=255)

                  accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                  <  2:1666237‑M2/18‑1 (MQ=255)

                  accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt                                  <  2:1377745‑M2/18‑1 (MQ=255)

                   ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc                                <  1:783878‑M2/20‑1 (MQ=255)

                    cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                               <  2:3294557‑M2/21‑1 (MQ=255)

                     gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt                              <  1:4896338‑M2/22‑1 (MQ=255)

                      cactagtcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt                             >  1:4906766‑M2/28‑50 (MQ=255)

                       actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                            <  1:847228‑M2/24‑1 (MQ=255)

                       actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt                             >  1:1924685‑M2/27‑49 (MQ=255)

                        ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           <  2:1094452‑M2/25‑1 (MQ=255)

                        ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           <  2:123276‑M2/25‑1 (MQ=255)

                        ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                           <  1:2095103‑M2/25‑1 (MQ=255)

                         taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  2:4516116‑M2/25‑50 (MQ=255)

                         taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:2357932‑M2/25‑50 (MQ=255)

                         taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  2:653307‑M2/25‑50 (MQ=255)

                         taggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:1385956‑M2/25‑50 (MQ=255)

                          aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          >  1:419584‑M2/24‑49 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc                          <  2:3560031‑M2/26‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg                         <  2:2384431‑M2/27‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        <  1:4667607‑M2/28‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        <  1:5276074‑M2/28‑1 (MQ=255)

                           ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa                        >  1:292580‑M2/23‑50 (MQ=255)

                            gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                       >  2:5532306‑M2/22‑50 (MQ=255)

                            gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt                       <  2:4073628‑M2/29‑1 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      <  1:3420710‑M2/30‑1 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      <  1:1374713‑M2/30‑1 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      <  2:601021‑M2/30‑1 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      <  1:2055340‑M2/30‑1 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      >  2:4955855‑M2/21‑50 (MQ=255)

                             cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                      <  1:5165557‑M2/30‑1 (MQ=255)

                              ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     <  2:641424‑M2/31‑1 (MQ=255)

                              ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     <  2:1604248‑M2/31‑1 (MQ=255)

                              ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     <  2:1591515‑M2/31‑1 (MQ=255)

                              ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                     <  2:4440998‑M2/31‑1 (MQ=255)

                                gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                   >  1:479460‑M2/18‑50 (MQ=255)

                                gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                   >  2:1337766‑M2/18‑50 (MQ=255)

                                 tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  >  1:906221‑M2/17‑50 (MQ=255)

                                 tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  <  1:4692707‑M2/34‑1 (MQ=255)

                                 tatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCt                  >  2:2913046‑M2/17‑50 (MQ=255)

                                   tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg                <  2:1950531‑M2/36‑1 (MQ=255)

                                   tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 <  2:2648007‑M2/35‑1 (MQ=255)

                                   tattcgtcaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg                 <  2:3610920‑M2/35‑1 (MQ=255)

                                     ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt              >  2:5491185‑M2/13‑50 (MQ=255)

                                     ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCt              <  1:1603780‑M2/38‑1 (MQ=255)

                                       cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg             >  2:3603895‑M2/11‑49 (MQ=255)

                                       cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg             >  2:4568624‑M2/11‑49 (MQ=255)

                                        gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGt            <  2:31772‑M2/40‑1 (MQ=255)

                                        gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           >  1:4513761‑M2/10‑50 (MQ=255)

                                        gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           <  1:5630087‑M2/41‑1 (MQ=255)

                                        gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           <  2:2539874‑M2/41‑1 (MQ=255)

                                        gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa           >  2:4053633‑M2/10‑50 (MQ=255)

                                          gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         >  1:406386‑M2/8‑50 (MQ=255)

                                          gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg         >  2:3248623‑M2/8‑50 (MQ=255)

                                           aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc        <  2:3066925‑M2/44‑1 (MQ=255)

                                           aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc        <  2:3129328‑M2/44‑1 (MQ=255)

                                            aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg       >  1:5451786‑M2/6‑50 (MQ=255)

                                            aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg       >  2:2226402‑M2/6‑50 (MQ=255)

                                             ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      >  2:5027840‑M2/5‑50 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt      >  2:420616‑M2/4‑49 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc     <  1:2714543‑M2/47‑1 (MQ=255)

                                              gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc     <  1:664849‑M2/47‑1 (MQ=255)

                                                aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa   >  1:2970506‑M2/2‑50 (MQ=255)

AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAAC  >  NC_000913/258635‑258733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`